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[186219_at] 7TM chemoreceptor, srz family

Description C09G12.3 /REP_DB=WormBase Gene ID /WP=CE16837 /TR=O44459 /GB=AAC25814.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 0      6grp_cgc > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 26.3
(-1.3)
A 		10.3
(-3)
A 		10.6
(-3)
A 		67.5
(3)
A 		57
B 11.3
(0.1)
A 		3.4
(-3)
A 		18.8
(3)
A 		10.2
(-0.4)
A 		15
C 6.7
(-3)
A 		12.2
(-2.4)
A 		23
(-1.2)
A 		61.1
(3)
A 		54
avr 14.8
(-2) 		8.6
(-3) 		17.5
(-1.6) 		46.3
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 52.6
(3)
A 		9.8
(-2.4)
A 		23.9
(-0.6)
A 		5.4
(-3)
A 		46.9
(2.3)
A 		23.6
(-0.7)
A 		47
B 51.8
(3)
A 		29.3
(0)
A 		30.5
(0.2)
A 		6.5
(-3)
A 		19.4
(-1.3)
A 		16.4
(-1.7)
A 		45
C 7
(-2.5)
A 		55.9
(2.4)
A 		8.7
(-2.4)
A 		61.6
(3)
A 		8.2
(-2.4)
A 		2.3
(-3)
A 		59
avr 37.1
(3) 		31.7
(1.6) 		21
(-1.2) 		24.5
(-0.3) 		24.8
(-0.2) 		14.1
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9.6
(2.8)
A 		2.2
(-3)
A 		2.8
(-2.5)
A 		9.9
(3)
A 		8
B 3.6
(1.7)
A 		0.8
(-3)
A 		4.4
(3)
A 		2.2
(-0.7)
A 		4
C 2.2
(-3)
A 		3.5
(-2)
A 		8
(1.3)
A 		10.3
(3)
A 		8
avr 5.1
(0.3) 		2.2
(-3) 		5.1
(0.3) 		7.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.7
(0.9)
A 		3.5
(-2)
A 		5.2
(-1.2)
A 		1.4
(-3)
A 		14.2
(3)
A 		5.7
(-1)
A 		13
B 18
(3)
A 		9.7
(-0.1)
A 		7.4
(-0.9)
A 		1.7
(-3)
A 		7.9
(-0.7)
A 		6.1
(-1.4)
A 		16
C 2.6
(-2.3)
A 		17
(3)
A 		2.2
(-2.5)
A 		12.4
(1.3)
A 		2.6
(-2.3)
A 		0.8
(-3)
A 		16
avr 10.1
(3) 		10.1
(3) 		4.9
(-2.3) 		5.2
(-2) 		8.2
(1.1) 		4.2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186219_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11103
Sequence Type Exemplar sequence
Representative Public ID C09G12.3 NCBI
Target Description C09G12.3 /REP_DB=WormBase Gene ID /WP=CE16837 /TR=O44459 /GB=AAC25814.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067957(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067957 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-78) (srz-78) mRNA, complete cds. 10/11 None
GENEFINDER00000001987 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3491774:3494284:1 10/11 None
C09G12.3 ENSEMBL cdna:known chromosome:CEL140:IV:3491774:3493213:1 gene:C09G12.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3491779-3493219(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srz family
Gene Symbol srz-78
Ensembl C09G12.3
Entrez Gene 182469 Entrez gene
SwissProt O44459 EMBL-EBI
WormBase CE37085 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25814 Serpentine receptor, class z protein 78 [Caenorhabditis elegans] ref|NP_500358.2| Serpentine Receptor, class Z family member (srz-78) [Caenorhabditis elegans] 0.0
blast AAC25814 Serpentine receptor, class z protein 78 [Caenorhabditis elegans] ref|NP_500358.2| Serpentine Receptor, class Z family member (srz-78) [Caenorhabditis elegans] 1.0E-178
blast AAC25815 Serpentine receptor, class z protein 79 [Caenorhabditis elegans] ref|NP_500359.1| Serpentine Receptor, class Z family member (srz-79) [Caenorhabditis elegans] 2.0E-88
blast AAC25815 Serpentine receptor, class z protein 79 [Caenorhabditis elegans] ref|NP_500359.1| Serpentine Receptor, class Z family member (srz-79) [Caenorhabditis elegans] 2.0E-83
blast CAH60794 Hypothetical protein Y7A9C.9 [Caenorhabditis elegans] ref|NP_001023588.1| Serpentine Receptor, class Z family member (srz-75) [Caenorhabditis elegans] 3.0E-78
blast CAH60794 Hypothetical protein Y7A9C.9 [Caenorhabditis elegans] ref|NP_001023588.1| Serpentine Receptor, class Z family member (srz-75) [Caenorhabditis elegans] 2.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 4.3E-83
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 8.9E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500358.2 6 24-46,71-93,103-125,158-180,195-217,238-260
C09G12.3 6 24-46,71-93,103-125,158-180,195-217,238-260
GENEFINDER00000001987 9 24-46,71-93,103-125,158-180,195-217,234-256,319-341,354-376,408-427
Sequence
Target Sequence 
>C. ELEGANS:186219_AT
cttgtttgtcctcttgattactgttatatgtttagcgggtgttgcctattatcatctcgg
ctttgttagatcactcccggaacaactcacttttgtcattctggtcacttttataatatt
cgcacagtacctttgtgcagaagcatttcaccttacaatcttcctcctcgctgctcaacg
acttctagtcttctttttcccgcacactgaaaagcaagtggcccggtttcaaaaattaat
ggctaaacatatctggtatttatatctagtgtgttttatcaaggagctagcactcgctat
tatcttttgcactacaatcagcactgaatttcttggaattgaagggaacccctttggcta
ttatacaatgatagccatcgtcctttttgtttacaacaacacatacggcacattttctac
gggaaagtacacattttgcatagcatgctcagatattgttacaacacctcttattgtaca
aatttcgtatttgggaagtaatggatgtattgcacaaccgtctgcgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGTTTGTCCTCTTGATTACTGTT 626 217 234 Antisense
TAGCGGGTGTTGCCTATTATCATCT 613 649 266 Antisense
TCGGCTTTGTTAGATCACTCCCGGA 399 605 290 Antisense
TCACTTTTGTCATTCTGGTCACTTT 419 627 320 Antisense
AAGCATTTCACCTTACAATCTTCCT 164 151 374 Antisense
GCTCAACGACTTCTAGTCTTCTTTT 705 297 406 Antisense
AGCACTCGCTATTATCTTTTGCACT 452 77 522 Antisense
GGAACCCCTTTGGCTATTATACAAT 250 531 578 Antisense
AATGATAGCCATCGTCCTTTTTGTT 685 163 600 Antisense
ACAACACATACGGCACATTTTCTAC 412 111 629 Antisense
ATGTATTGCACAACCGTCTGCGTCA 649 47 738 Antisense
Sequence Source Affymetrix Proprietary Database