[Home] | [Total List]

[186218_at]

Description C16C4.11 /REP_DB=WormBase Gene ID /WP=CE08207 /TR=O16559 /GB=AAB93656.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.7
(-3)
A 		15.6
(3)
A 		2.3
(-2.7)
A 		15.2
(2.8)
A 		14
B 0.4
(-3)
A 		0.8
(1)
A 		0.6
(-1)
A 		1
(3)
A 		1
C 0.9
(-3)
A 		1.1
(-2.7)
A 		1
(-2.9)
A 		5.4
(3)
A 		5
avr 1
(-3) 		5.8
(1.6) 		1.3
(-2.7) 		7.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 3.8
(-2.3)
A 		0.9
(-2.9)
A 		2.9
(-2.5)
A 		28.6
(3)
A 		0.5
(-3)
A 		0.9
(-2.9)
A 		28
B 1.2
(3)
A 		1.1
(2.3)
A 		1.1
(2.3)
A 		0.6
(-1.5)
A 		0.4
(-3)
A 		0.6
(-1.5)
A 		1
C 0.4
(-2.8)
A 		2.9
(3)
A 		1.6
(0)
A 		2.1
(1.2)
A 		0.4
(-2.8)
A 		0.3
(-3)
A 		3
avr 1.8
(-2.2) 		1.6
(-2.3) 		1.9
(-2.1) 		10.4
(3) 		0.4
(-3) 		0.6
(-2.9) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.6
(-3)
A 		3.4
(3)
A 		0.6
(-3)
A 		2.2
(0.4)
A 		3
B 0.1
(-3)
A 		0.2
(3)
A 		0.1
(-3)
A 		0.2
(3)
A 		0
C 0.3
(-3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.9
(3)
A 		1
avr 0.3
(-3) 		1.3
(3) 		0.3
(-3) 		1.1
(1.8) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.7
(-2.5)
A 		0.3
(-2.8)
A 		0.6
(-2.6)
A 		7.3
(3)
A 		0.1
(-3)
A 		0.2
(-2.9)
A 		7
B 0.4
(3)
A 		0.4
(3)
A 		0.3
(-0)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0
C 0.2
(-2.3)
A 		0.9
(3)
A 		0.4
(-0.8)
A 		0.4
(-0.8)
A 		0.1
(-3)
A 		0.1
(-3)
A 		1
avr 0.4
(-2.3) 		0.5
(-2) 		0.4
(-2.3) 		2.6
(3) 		0.1
(-3) 		0.2
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186218_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4396
Sequence Type Exemplar sequence
Representative Public ID C16C4.11 NCBI
Target Description C16C4.11 /REP_DB=WormBase Gene ID /WP=CE08207 /TR=O16559 /GB=AAB93656.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061708(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061708 NCBI Caenorhabditis elegans C16C4.11 (C16C4.11) mRNA, complete cds. 11/11 None
GENEFINDER00000026924 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1883598:1886481:-1 11/11 None
C16C4.11 ENSEMBL cdna:known chromosome:CEL140:II:1883598:1884737:-1 gene:C16C4.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1883596-1884736(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C4.11
Entrez Gene 182665 Entrez gene
SwissProt O16559 EMBL-EBI
WormBase CE08207 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93656 Hypothetical protein C16C4.11 [Caenorhabditis elegans] ref|NP_494109.1| C16C4.11 [Caenorhabditis elegans] 1.0E-166
blast AAB93657 Hypothetical protein C16C4.12 [Caenorhabditis elegans] ref|NP_494110.1| C16C4.12 [Caenorhabditis elegans] 1.0E-149
blast AAB71075 Hypothetical protein ZK250.6 [Caenorhabditis elegans] ref|NP_494136.1| ZK250.6 [Caenorhabditis elegans] 1.0E-140
blast AAB93655 Hypothetical protein C16C4.10 [Caenorhabditis elegans] ref|NP_494108.1| C16C4.10 [Caenorhabditis elegans] 1.0E-104
blast AAB93651 Hypothetical protein C16C4.5 [Caenorhabditis elegans] ref|NP_494101.1| C16C4.5 [Caenorhabditis elegans] 2.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 2.9E-38
Pfam IPR002083 EMBL-EBI MATH 9.9E-49
Pfam IPR002083 EMBL-EBI MATH 9.0E-37
Pfam IPR002083 EMBL-EBI MATH 1.6E-52
Pfam IPR002083 EMBL-EBI MATH 2.9E-38
Pfam IPR002083 EMBL-EBI MATH 9.9E-49
Sequence
Target Sequence 
>C. ELEGANS:186218_AT
atggttgattcatgttgattacacattgaaattggcatcgaaaaacgaaatgatgaaatg
gacgaaaaggggaacgtggatatttctaacaaggccgagtcgatgtggttgccctaattt
catcagctggaaggtgttggaaagtgattgtgtggttaatgatagtattgtagttgaagc
tcatgtcaaaataaataaaataattgactctccgtgcattgaaaacgaaaatcaaaaaat
gtttctgttgcatcacactgttaaaaatgtttcgagtattaaagaaggaggtaactattt
cacaaaaacagagaaacgattcaatattccatggaaattaaacattgaaagaaagaatgg
attttttggattatatctacactgtaccaaagaactgtctaataaaaataactggactat
tgaagtggagtttgatctaagattggtgtctctgaatggtcagagtttatctatcaaatt
aacatccacttacaaagagcattatggttacggctgggataaatttctaagatgggacga
tatgctagagaagtacacggtgaacgacagtataatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTTGATTCATGTTGATTACACA 310 51 222 Antisense
GTGGATATTTCTAACAAGGCCGAGT 369 489 297 Antisense
AAGGCCGAGTCGATGTGGTTGCCCT 385 159 312 Antisense
TGTGGTTGCCCTAATTTCATCAGCT 365 555 325 Antisense
TCATCAGCTGGAAGGTGTTGGAAAG 171 619 341 Antisense
TCAAAAAATGTTTCTGTTGCATCAC 539 629 453 Antisense
TTTTGGATTATATCTACACTGTACC 618 675 585 Antisense
TACACTGTACCAAAGAACTGTCTAA 401 643 599 Antisense
ATCTATCAAATTAACATCCACTTAC 77 33 690 Antisense
GAGCATTATGGTTACGGCTGGGATA 333 387 718 Antisense
GTACACGGTGAACGACAGTATAATC 678 457 774 Antisense
Sequence Source Affymetrix Proprietary Database