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[186217_at]

Description C50H11.8 /REP_DB=WormBase Gene ID /WP=CE08924 /TR=O16468 /GB=AAG23996.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 24.6
(-0.4)
A 		10.2
(-2.5)
A 		7.1
(-3)
A 		47
(3)
A 		40
B 43.8
(3)
A 		6.2
(-3)
A 		20.4
(-0.7)
A 		36.2
(1.8)
A 		38
C 10
(-3)
A 		29.9
(-1.4)
A 		10.9
(-2.9)
A 		86.7
(3)
A 		77
avr 26.1
(-1.2) 		15.4
(-2.6) 		12.8
(-3) 		56.6
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 29.4
(0.3)
A 		47.5
(3)
A 		26.8
(-0.1)
A 		7.1
(-3)
A 		11.9
(-2.3)
A 		20.1
(-1.1)
A 		40
B 35.6
(-2)
A 		45.1
(-1.1)
A 		89.5
(3)
P 		70.5
(1.2)
P 		25
(-3)
A 		28.8
(-2.6)
A 		65
C 9.6
(-3)
A 		97.5
(3)
M 		72.3
(1.3)
A 		35.5
(-1.2)
A 		15.2
(-2.6)
A 		32.8
(-1.4)
A 		88
avr 24.9
(-2) 		63.4
(3) 		62.9
(2.9) 		37.7
(-0.4) 		17.4
(-3) 		27.2
(-1.7) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9
(3)
A 		2.2
(-2.7)
A 		1.9
(-3)
A 		6.9
(1.2)
A 		7
B 14
(3)
A 		1.5
(-3)
A 		4.7
(-1.5)
A 		7.7
(-0)
A 		13
C 3.3
(-3)
A 		8.6
(-0.2)
A 		3.8
(-2.7)
A 		14.6
(3)
A 		11
avr 8.8
(2.1) 		4.1
(-2.4) 		3.5
(-3) 		9.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 5.4
(-1.6)
A 		16.9
(3)
A 		5.8
(-1.4)
A 		1.8
(-3)
A 		3.6
(-2.3)
A 		4.9
(-1.8)
A 		15
B 12.4
(-1.9)
A 		15
(-0.5)
A 		21.7
(3)
P 		18.7
(1.4)
P 		10.2
(-3)
A 		10.7
(-2.7)
A 		12
C 3.6
(-3)
A 		29.8
(3)
M 		18.4
(0.4)
A 		7.1
(-2.2)
A 		4.9
(-2.7)
A 		11
(-1.3)
A 		26
avr 7.1
(-2.6) 		20.6
(3) 		15.3
(0.8) 		9.2
(-1.8) 		6.2
(-3) 		8.9
(-1.9) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186217_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15564
Sequence Type Exemplar sequence
Representative Public ID C50H11.8 NCBI
Target Description C50H11.8 /REP_DB=WormBase Gene ID /WP=CE08924 /TR=O16468 /GB=AAG23996.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071431(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071431 NCBI Caenorhabditis elegans C50H11.8 (C50H11.8) mRNA, complete cds. 10/11 None
GENEFINDER00000043575 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3054380:3055264:1 11/11 None
C50H11.8 ENSEMBL cdna:known chromosome:CEL140:V:3054380:3055262:1 gene:C50H11.8 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3054379-3055264(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50H11.8
Entrez Gene 183697 Entrez gene
SwissProt O16468 EMBL-EBI
WormBase CE35258 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503832 C50H11.8 [Caenorhabditis elegans] gb|AAG23996.2| Hypothetical protein C50H11.8 [Caenorhabditis elegans] 2.0E-51
blast NP_503832 C50H11.8 [Caenorhabditis elegans] gb|AAG23996.2| Hypothetical protein C50H11.8 [Caenorhabditis elegans] 2.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503832.2 1 50-72
C50H11.8 1 50-72
GENEFINDER00000043575 1 50-72
Sequence
Target Sequence 
>C. ELEGANS:186217_AT
ccccactccgagcttttcaagagttcttgtctctatccatgctccgaatggggcggagtc
cggtatataaagcgcgtgtcaaacgttggaaccttcacttctcactctcgagaacttttt
cttcgtcaatgtccttctcctctcttctcttccttttcgccttcatcggttgtgcatcgg
ctctgagctgccacgtgggctttgggcacaagactgtcgtgatgccaggattcaaatatt
gcctgaaaacagtgtccggagcaacgaagcttatcgcctactcggctaccaacgacgagg
ccagtcatatggacgggcgctccaagcacaagaccgacttcatcatagattgttactgcc
aaagcgaggaatgcaacgctccagcatccacaaaacaggctttcagcacattccaagagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCACTCCGAGCTTTTCAAGAGTT 31 261 23 Antisense
AAGAGTTCTTGTCTCTATCCATGCT 308 155 41 Antisense
CAAACGTTGGAACCTTCACTTCTCA 340 187 102 Antisense
GAACTTTTTCTTCGTCAATGTCCTT 516 347 134 Antisense
CGTGGGCTTTGGGCACAAGACTGTC 222 245 216 Antisense
GAGCAACGAAGCTTATCGCCTACTC 183 391 281 Antisense
GGCTACCAACGACGAGGCCAGTCAT 132 537 306 Antisense
TCATATGGACGGGCGCTCCAAGCAC 416 619 327 Antisense
CTCCAAGCACAAGACCGACTTCATC 494 235 342 Antisense
GCTCCAGCATCCACAAAACAGGCTT 57 297 400 Antisense
CAGGCTTTCAGCACATTCCAAGAGT 350 209 418 Antisense
Sequence Source Affymetrix Proprietary Database