[Home] | [Total List]

[186216_at]

Description Y95B8A.6 /REP_DB=WormBase Gene ID /WP=CE23158 /TR=Q9N2V8 /GB=AAF60899.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      6grp_highest_nonorm > 90      6grp_total > 45      4grp_total > 14      6grp_highest_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 304
1 2 3 4 range
A 261.4
(1)
P 		91.6
(-2.4)
A 		62.9
(-3)
A 		363.1
(3)
P 		300
B 216.4
(0)
P 		111.6
(-2.1)
P 		64.5
(-3)
A 		366.9
(3)
P 		302
C 334.3
(3)
P 		147.5
(-2)
P 		108
(-3)
A 		300.9
(2.1)
P 		226
avr 270.7
(1.4) 		116.9
(-2.1) 		78.5
(-3) 		343.6
(3) 		265

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 200.4
(3)
P 		131.1
(-1.9)
P 		179.9
(1.5)
P 		115.8
(-3)
P 		132.7
(-1.8)
P 		187.4
(2.1)
P 		85
B 151.4
(-1.3)
P 		176.4
(0.5)
P 		211.4
(3)
P 		159.9
(-0.7)
P 		128.3
(-3)
P 		133.8
(-2.6)
P 		83
C 146.8
(2.6)
P 		139.6
(1.4)
P 		115.9
(-2.3)
P 		111.8
(-3)
P 		135.4
(0.8)
P 		149.3
(3)
P 		38
avr 166.2
(2.6) 		149
(-0) 		169.1
(3) 		129.2
(-3) 		132.1
(-2.6) 		156.8
(1.2) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 95.2
(3)
P 		19.9
(-2.7)
A 		16.4
(-3)
A 		53.1
(-0.2)
P 		79
B 69
(2.1)
P 		27.6
(-1.8)
P 		14.9
(-3)
A 		78.2
(3)
P 		63
C 110.7
(3)
P 		42.4
(-2.6)
P 		37.6
(-3)
A 		50.7
(-1.9)
P 		73
avr 91.6
(3) 		30
(-2.4) 		23
(-3) 		60.7
(0.3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 36.9
(-0.4)
P 		46.6
(3)
P 		39.2
(0.4)
P 		29.4
(-3)
P 		40
(0.7)
P 		45.6
(2.7)
P 		17
B 52.7
(0.8)
P 		58.7
(3)
P 		51.3
(0.3)
P 		42.4
(-3)
P 		52.1
(0.6)
P 		49.9
(-0.2)
P 		16
C 54.4
(3)
P 		42.6
(0.8)
P 		29.5
(-1.7)
P 		22.5
(-3)
P 		43.8
(1)
P 		50
(2.2)
P 		32
avr 48
(2.6) 		49.3
(3) 		40
(-0.1) 		31.4
(-3) 		45.3
(1.7) 		48.5
(2.7) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186216_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4
Sequence Type Exemplar sequence
Representative Public ID Y95B8A.6 NCBI
Target Description Y95B8A.6 /REP_DB=WormBase Gene ID /WP=CE23158 /TR=Q9N2V8 /GB=AAF60899.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058387(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058387 NCBI Caenorhabditis elegans Y95B8A.6a (Y95B8A.6) mRNA, complete cds. 11/11 None
GENEFINDER00000034293 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:882817:889792:1 11/11 None
Y95B8A.6a.2 ENSEMBL cdna:known chromosome:CEL140:I:882920:889792:1 gene:Y95B8A.6 11/11 A 
Y95B8A.6a.1 ENSEMBL cdna:known chromosome:CEL140:I:886213:890209:1 gene:Y95B8A.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182019 7/11 Cross Hyb Matching Probes None
SNAP00000034256 3/11 Cross Hyb Matching Probes None
Y95B8A.6b 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171674 2 1 NM_058387 186216_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:886608-889792(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y95B8A.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60899 Hypothetical protein Y95B8A.6a [Caenorhabditis elegans] ref|NP_490788.1| Y95B8A.6a [Caenorhabditis elegans] 5.0E-98
blast AAF60899 Hypothetical protein Y95B8A.6a [Caenorhabditis elegans] ref|NP_490788.1| Y95B8A.6a [Caenorhabditis elegans] 2.0E-97
blast CAE71589 Hypothetical protein CBG18546 [Caenorhabditis briggsae] 2.0E-88
blast CAE71589 Hypothetical protein CBG18546 [Caenorhabditis briggsae] 6.0E-88
blast AAO21388 Hypothetical protein Y95B8A.6b [Caenorhabditis elegans] ref|NP_871819.1| Y95B8A.6b [Caenorhabditis elegans] 8.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034293 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:186216_AT
gtcggctcgcaatgagtttcctgatctcaggggtttggctcacaaagcttcaacggacta
tcattgcgggaagaggtgccaacgatcgagtcaactaattcgaaaaatcataaaaaccgg
ccaaccggcagaagccgaacgtgcttggtgggacgaggaagagtgggaggagggcgagag
acgcaggaaacgagccatcgaatggaaggatacagatgatcgtctgctaatgcgaaatac
cggaacatcacgtcatattttgggaatgactgtggcggtggaatgcgatgatgagactgg
agaatttaatagtggtggatactcgttgtgtactacgtgccgtgctgttcgacacttgcc
atccacgtattttccacgtgtcattaatgagctgatttgctcgcagaaagcgtgtttgcg
aggagaaggaaaatgcatacaacgggttatgccgatgaaggttctccgaaacgtgggcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGGCTCGCAATGAGTTTCCTGAT 392 471 30 Antisense
TGATCTCAGGGGTTTGGCTCACAAA 93 565 51 Antisense
GGCTCACAAAGCTTCAACGGACTAT 598 535 66 Antisense
GAGGTGCCAACGATCGAGTCAACTA 212 403 102 Antisense
CCGGCCAACCGGCAGAAGCCGAACG 318 1 146 Antisense
AGCCGAACGTGCTTGGTGGGACGAG 14 83 162 Antisense
GAGACGCAGGAAACGAGCCATCGAA 680 393 207 Antisense
GAAATACCGGAACATCACGTCATAT 192 361 263 Antisense
TACTCGTTGTGTACTACGTGCCGTG 148 645 349 Antisense
GCCATCCACGTATTTTCCACGTGTC 431 281 387 Antisense
TGAAGGTTCTCCGAAACGTGGGCAC 655 567 485 Antisense
Sequence Source Affymetrix Proprietary Database