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[186214_at]

Description Y41G9A.5 /REP_DB=WormBase Gene ID /WP=CE21861 /TR=Q9N503 /GB=AAF60547.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 50      6grp_total > 17      4grp_total > 51      6grp_highest_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 443
1 2 3 4 range
A 461.6
(0.6)
P 		610.2
(3)
P 		418
(-0.2)
P 		246.1
(-3)
P 		364
B 401.1
(-0.3)
P 		567.1
(3)
P 		360.4
(-1.2)
P 		268.8
(-3)
P 		298
C 364.8
(-1.3)
P 		679.9
(3)
P 		452.4
(-0.1)
P 		236.5
(-3)
P 		443
avr 409.2
(-0.4) 		619.1
(3) 		410.3
(-0.4) 		250.5
(-3) 		369

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 851
1 2 3 4 5 6 range
A 1129
(3)
P 		410.9
(-2.2)
P 		400.8
(-2.3)
P 		562.4
(-1.1)
P 		297.8
(-3)
P 		623.7
(-0.6)
P 		831
B 750.4
(3)
P 		421.7
(-1.2)
P 		476.6
(-0.5)
P 		412.5
(-1.3)
P 		278.1
(-3)
P 		553.8
(0.5)
P 		472
C 843.2
(3)
P 		393.2
(-1.8)
P 		528.5
(-0.3)
P 		352.5
(-2.2)
P 		278.5
(-3)
P 		497.7
(-0.7)
P 		565
avr 907.5
(3) 		408.6
(-1.8) 		468.6
(-1.2) 		442.5
(-1.5) 		284.8
(-3) 		558.4
(-0.4) 		623
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 168.1
(3)
P 		132.4
(1.4)
P 		109.3
(0.3)
P 		36
(-3)
P 		132
B 127.9
(2.1)
P 		140.1
(3)
P 		83.5
(-1.1)
P 		57.3
(-3)
P 		83
C 120.8
(0.1)
P 		195.5
(3)
P 		157.7
(1.5)
P 		39.9
(-3)
P 		156
avr 138.9
(2.1) 		156
(3) 		116.8
(0.9) 		44.4
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 208.1
(3)
P 		146.1
(-0.1)
P 		87.3
(-3)
P 		142.6
(-0.3)
P 		89.8
(-2.9)
P 		151.8
(0.2)
P 		121
B 261.1
(3)
P 		140.4
(-1.8)
P 		115.7
(-2.7)
P 		109.3
(-3)
P 		113
(-2.9)
P 		206.5
(0.8)
P 		152
C 312.5
(3)
P 		120
(-1.8)
P 		134.5
(-1.4)
P 		70.9
(-3)
P 		90.1
(-2.5)
P 		166.6
(-0.6)
P 		242
avr 260.6
(3) 		135.5
(-1.6) 		112.5
(-2.5) 		107.6
(-2.6) 		97.6
(-3) 		175
(-0.2) 		163
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186214_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18424
Sequence Type Exemplar sequence
Representative Public ID Y41G9A.5 NCBI
Target Description Y41G9A.5 /REP_DB=WormBase Gene ID /WP=CE21861 /TR=Q9N503 /GB=AAF60547.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076106(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076106 NCBI Caenorhabditis elegans Y41G9A.5 (Y41G9A.5) mRNA, complete cds. 11/11 None
SNAP00000022729 ENSEMBL cdna:SNAP chromosome:CEL140:X:2946773:2948941:1 11/11 None
GENEFINDER00000022741 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2946975:2948941:1 11/11 None
Y41G9A.5 ENSEMBL cdna:known chromosome:CEL140:X:2946773:2948941:1 gene:Y41G9A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2946772-2948941(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41G9A.5
Entrez Gene 189838 Entrez gene
SwissProt Q9N503 EMBL-EBI
WormBase CE21861 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508507 Y41G9A.5 [Caenorhabditis elegans] gb|AAF60547.1| Hypothetical protein Y41G9A.5 [Caenorhabditis elegans] 1.0E-166
blast NP_508507 Y41G9A.5 [Caenorhabditis elegans] gb|AAF60547.1| Hypothetical protein Y41G9A.5 [Caenorhabditis elegans] 1.0E-154
blast CAE58811 Hypothetical protein CBG02018 [Caenorhabditis briggsae] 9.0E-79
blast CAE58811 Hypothetical protein CBG02018 [Caenorhabditis briggsae] 3.0E-76
Sequence
Target Sequence 
>C. ELEGANS:186214_AT
agaatgtatccacgattccatccacaacaagtgcaactgaaaacacatcatcagagactt
cagtattagaaaaagacgagatcacatcttctgaattttttgcgacatcaagtgagacta
ctgaagctccagaaacatcaaccactactgaaaaagcgacaactacggaaataactccag
tttcttccgatagtccagcaatagaaagtacgacgactaccacagcctctccaaaaacgt
ccactacgcttacaccagaacctataacaacagtacctgcaaaggatgtaaagccagtta
cacttttagcattccaggaagttagcaatgaagttacttccaacgtctctaatgtaacgc
aaccgaccgtagatcaaagcacaagtgctaacaatttgaatgaaattggagaagggtctg
ggacggagcctcttgctacatctgagccgcaccctactgaatctaaatttgttacgggaa
ttgttggactgcgagctccgccaatgccaaaaaccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATGTATCCACGATTCCATCCAC 505 75 629 Antisense
CAGTTTCTTCCGATAGTCCAGCAAT 600 205 806 Antisense
AGAAAGTACGACGACTACCACAGCC 665 71 831 Antisense
TCTCCAAAAACGTCCACTACGCTTA 158 609 856 Antisense
ACTACGCTTACACCAGAACCTATAA 261 97 871 Antisense
AGTTACACTTTTAGCATTCCAGGAA 151 63 924 Antisense
TGAAGTTACTTCCAACGTCTCTAAT 279 575 957 Antisense
CGCAACCGACCGTAGATCAAAGCAC 203 255 986 Antisense
GAGAAGGGTCTGGGACGGAGCCTCT 471 391 1037 Antisense
GGGAATTGTTGGACTGCGAGCTCCG 378 493 1104 Antisense
AGCTCCGCCAATGCCAAAAACCAAT 261 81 1122 Antisense
Sequence Source Affymetrix Proprietary Database