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[186213_at]

Description R11G11.8 /REP_DB=WormBase Gene ID /WP=CE12754 /TR=O16950 /GB=AAC69082.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 35      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 42.9
(-3)
A 		60.8
(3)
A 		50.2
(-0.6)
A 		58.3
(2.2)
A 		18
B 20.1
(-3)
A 		71.2
(3)
A 		23.4
(-2.6)
A 		58.1
(1.5)
A 		51
C 48.9
(1.7)
A 		53.9
(2.6)
A 		22
(-3)
A 		56.1
(3)
P 		34
avr 37.3
(-1.9) 		62
(3) 		31.9
(-3) 		57.5
(2.1) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 56.8
(3)
M 		17.6
(-1.8)
A 		45
(1.6)
A 		7.4
(-3)
A 		29.2
(-0.4)
A 		43.4
(1.4)
A 		49
B 20
(-1.5)
A 		49.8
(3)
A 		25.2
(-0.7)
A 		36.5
(1)
A 		10.3
(-3)
A 		28.2
(-0.3)
A 		40
C 35
(-1.1)
A 		43.1
(0.3)
A 		58.2
(3)
A 		53.9
(2.2)
A 		24.3
(-3)
A 		33
(-1.5)
A 		34
avr 37.3
(1.5) 		36.8
(1.3) 		42.8
(3) 		32.6
(0.2) 		21.3
(-3) 		34.9
(0.8) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 15.6
(3)
A 		13.2
(1)
A 		13.1
(0.9)
A 		8.5
(-3)
A 		7
B 6.4
(-2.5)
A 		17.6
(3)
A 		5.4
(-3)
A 		12.4
(0.4)
A 		12
C 16.2
(3)
A 		15.5
(2.5)
A 		7.7
(-3)
A 		9.5
(-1.7)
P 		9
avr 12.7
(0.6) 		15.4
(3) 		8.7
(-3) 		10.1
(-1.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 10.5
(2.9)
M 		6.3
(0)
A 		9.8
(2.4)
A 		1.9
(-3)
A 		8.8
(1.8)
A 		10.6
(3)
A 		9
B 7
(-1.6)
A 		16.6
(3)
A 		6.1
(-2.1)
A 		9.7
(-0.3)
A 		4.2
(-3)
A 		10.5
(0)
A 		12
C 13
(1.4)
A 		13.1
(1.5)
A 		14.8
(3)
A 		10.8
(-0.5)
A 		7.9
(-3)
A 		11
(-0.3)
A 		7
avr 10.2
(0.8) 		12
(3) 		10.2
(0.8) 		7.5
(-2.4) 		7
(-3) 		10.7
(1.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186213_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15293
Sequence Type Exemplar sequence
Representative Public ID R11G11.8 NCBI
Target Description R11G11.8 /REP_DB=WormBase Gene ID /WP=CE12754 /TR=O16950 /GB=AAC69082.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R11G11.8 ENSEMBL cdna:pseudogene chromosome:CEL140:V:507941:509632:-1 gene:R11G11.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021493 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:507940-509637(-) 88.89 88.89
Public Domain and Genome References
Ensembl R11G11.8
Sequence
Target Sequence 
>C. ELEGANS:186213_AT
gcgagtgtacgcctgataattatcagaagagtttctagcaagtccatcgccgccaccccg
aaaatgggatacattttgatgtcagtggtgttttcaataagttttattatacaagcagca
tggcaatatggggctgaagttgttgagagtccaagaatgaattttcacaaaaattgcgcc
gaatatcaagacctcaataatttaccaaaattcaaattagacttccgtcaattttcggga
aattatccaattttgattattcaagtatacattactttagatgtgattgtttcgcaattt
cttccaagtgtaactttcccgattctaacatcgtttctttttcatgaactccgaaaactc
aataaaacaagacgatttctgacagatcttatgatctactttactattttctcaacttcc
gtgtcgattttccgcccaattatgtgttttttgatgtctagccgataccgcagtactgca
cgaaaattattcgcattaaaaacaagagagtcaacaattcgtctgagaactacatccgtg
tcattccgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAGTGTACGCCTGATAATTATCA 225 291 580 Antisense
AAGAGTTTCTAGCAAGTCCATCGCC 241 155 606 Antisense
GCCGCCACCCCGAAAATGGGATACA 140 283 628 Antisense
ATTGCGCCGAATATCAAGACCTCAA 401 7 752 Antisense
TCGCAATTTCTTCCAAGTGTAACTT 541 599 871 Antisense
GTGTAACTTTCCCGATTCTAACATC 183 487 887 Antisense
CATCGTTTCTTTTTCATGAACTCCG 459 211 908 Antisense
TTACTATTTTCTCAACTTCCGTGTC 95 679 980 Antisense
TTTCCGCCCAATTATGTGTTTTTTG 74 671 1008 Antisense
TGATGTCTAGCCGATACCGCAGTAC 380 567 1031 Antisense
GAACTACATCCGTGTCATTCCGAAA 564 349 1106 Antisense
Sequence Source Affymetrix Proprietary Database