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[186211_at]

Description Y60C6A.1 /REP_DB=WormBase Gene ID /WP=CE22671 /TR=Q9UAZ5 /GB=AAD14763.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_high_8_8 > 06      6grp_highest_nonorm > 99      6grp_total > 78      4grp_total > 02      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7145
1 2 3 4 range
A 135.7
(-2.9)
P 		70.6
(-3)
A 		61.3
(-3)
A 		3618.2
(3)
P 		3557
B 88
(-3)
P 		91.5
(-3)
P 		73.6
(-3)
P 		7200.7
(3)
P 		7127
C 125.7
(-2.9)
P 		111.3
(-2.9)
A 		55.5
(-3)
P 		6746.6
(3)
P 		6691
avr 116.5
(-2.9) 		91.1
(-3) 		63.5
(-3) 		5855.2
(3) 		5792

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3024
1 2 3 4 5 6 range
A 199.7
(-2.8)
P 		212.4
(-2.8)
P 		142.1
(-3)
P 		235.9
(-2.7)
P 		1025.8
(-0)
P 		1913.3
(3)
P 		1771
B 185.6
(-2.9)
P 		213.4
(-2.8)
P 		184.8
(-2.9)
P 		151.9
(-3)
P 		1195.1
(-0.5)
P 		2609.8
(3)
P 		2458
C 167.8
(-2.9)
P 		207.5
(-2.8)
P 		129
(-3)
P 		188.4
(-2.9)
P 		910
(-1.5)
P 		3152.5
(3)
P 		3024
avr 184.4
(-2.9) 		211.1
(-2.9) 		152
(-3) 		192.1
(-2.9) 		1043.6
(-0.8) 		2558.5
(3) 		2407
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1519
1 2 3 4 range
A 49.4
(-2.6)
P 		15.3
(-3)
A 		16
(-3)
A 		529.6
(3)
P 		514
B 28.1
(-3)
P 		22.6
(-3)
P 		17.1
(-3)
P 		1534.5
(3)
P 		1517
C 41.6
(-2.9)
P 		32
(-2.9)
A 		19.4
(-3)
P 		1137.6
(3)
P 		1118
avr 39.7
(-2.9) 		23.3
(-3) 		17.5
(-3) 		1067.2
(3) 		1050

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1024
1 2 3 4 5 6 range
A 36.8
(-2.9)
P 		75.5
(-2.4)
P 		31
(-3)
P 		59.8
(-2.6)
P 		309.5
(0.8)
P 		465.8
(3)
P 		435
B 64.6
(-2.8)
P 		71
(-2.8)
P 		44.9
(-3)
P 		40.2
(-3)
P 		485.5
(-0.1)
P 		973.2
(3)
P 		933
C 62.2
(-2.8)
P 		63.3
(-2.8)
P 		32.8
(-3)
P 		37.9
(-3)
P 		294.5
(-1.5)
P 		1055.3
(3)
P 		1023
avr 54.5
(-2.9) 		69.9
(-2.7) 		36.2
(-3) 		46
(-2.9) 		363.2
(-0.5) 		831.4
(3) 		795
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186211_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15292
Sequence Type Exemplar sequence
Representative Public ID Y60C6A.1 NCBI
Target Description Y60C6A.1 /REP_DB=WormBase Gene ID /WP=CE22671 /TR=Q9UAZ5 /GB=AAD14763.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071884(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071884 NCBI Caenorhabditis elegans Y60C6A.1 (Y60C6A.1) mRNA, complete cds. 11/11 None
SNAP00000011927 ENSEMBL cdna:SNAP chromosome:CEL140:V:4781329:4785954:1 11/11 None
GENEFINDER00000011929 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4783437:4785954:1 11/11 None
Y60C6A.1 ENSEMBL cdna:known chromosome:CEL140:V:4783437:4785954:1 gene:Y60C6A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4783436-4785954(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y60C6A.1
Entrez Gene 190442 Entrez gene
SwissProt Q9UAZ5 EMBL-EBI
WormBase CE22671 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14763 Hypothetical protein Y60C6A.1 [Caenorhabditis elegans] ref|NP_504285.1| Y60C6A.1 [Caenorhabditis elegans] 1.0E-177
blast AAD14763 Hypothetical protein Y60C6A.1 [Caenorhabditis elegans] ref|NP_504285.1| Y60C6A.1 [Caenorhabditis elegans] 1.0E-158
blast NP_001023737 C54F6.15 [Caenorhabditis elegans] gb|AAX22291.1| Hypothetical protein C54F6.15 [Caenorhabditis elegans] 1.0E-10
blast CAE64188 Hypothetical protein CBG08815 [Caenorhabditis briggsae] 6.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 2.8E-7
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 2.8E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504285.1 2 116-138,236-258
Y60C6A.1 2 116-138,236-258
SNAP00000011927 2 113-135,233-255
GENEFINDER00000011929 2 116-138,236-258
Sequence
Target Sequence 
>C. ELEGANS:186211_AT
aaagccgacaaggagcacgtggagctccaggagcacgtggaagaaccagaagaaaacttc
aatgatgacactgatgaagaggaacatgtggaggaagagcaacagaagatgatttgttgt
ccaaagtatggagtaccgaacccagtcccgatgtacaccggaaatctcgacggatacaac
tactatattgtctacttttgcccacgcatattttttaaaaaggtgtcattaaaaacaaat
aaacctggagccttacttcctcttgttttcaccgtttttttctatttaaaatgcaccgaa
attatcatctactatcattttaacatgctctgcaaaattttcatcccatctcttcttctc
cttttcacgacttcaactgcatttgacaaggagcttggtaaaaagtgttacatttcgtgt
gtcaactctacaagtatcgctgaatgggaaacatgcgaaaaaacgtgttttgggcaagga
gatgatgaggataaagcttatataaattgttatgtcaattgtgtcgatctgtacttcgct
ccggatggcaagttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCCGACAAGGAGCACGTGGAGC 619 123 472 Antisense
AGTCCCGATGTACACCGGAAATCTC 31 53 615 Antisense
TACTATATTGTCTACTTTTGCCCAC 501 645 652 Antisense
TACTTTTGCCCACGCATATTTTTTA 598 645 664 Antisense
GCACCGAAATTATCATCTACTATCA 300 315 764 Antisense
GCTCTGCAAAATTTTCATCCCATCT 700 299 798 Antisense
CCTTTTCACGACTTCAACTGCATTT 613 267 831 Antisense
GTTACATTTCGTGTGTCAACTCTAC 147 447 878 Antisense
GTCAACTCTACAAGTATCGCTGAAT 191 465 892 Antisense
AATTGTGTCGATCTGTACTTCGCTC 461 179 988 Antisense
TACTTCGCTCCGGATGGCAAGTTGA 400 645 1003 Antisense
Sequence Source Affymetrix Proprietary Database