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[186210_at]

Description C01B12.2 /REP_DB=WormBase Gene ID /WP=CE07790 /TR=O17208 /GB=AAB70975.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 07      4grp_high_8_8 > 20      6grp_highest_nonorm > 74      6grp_total > 50      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 686
1 2 3 4 range
A 744.6
(-1.5)
P 		866.4
(-0.3)
P 		582.7
(-3)
P 		1224.3
(3)
P 		642
B 698.1
(-3)
P 		845.3
(0.9)
P 		706.2
(-2.8)
P 		925.7
(3)
P 		228
C 904.9
(-1.1)
P 		843.8
(-1.7)
P 		731.5
(-3)
P 		1269
(3)
P 		538
avr 782.5
(-1.6) 		851.8
(-0.7) 		673.5
(-3) 		1139.7
(3) 		466

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 781.2
(2.2)
P 		751
(1.4)
P 		814.5
(3)
P 		661.4
(-0.8)
P 		573.9
(-3)
P 		699.2
(0.1)
P 		241
B 725.1
(1.3)
P 		733.6
(1.5)
P 		640.2
(-1.2)
P 		783.3
(3)
P 		579.2
(-3)
P 		663.1
(-0.5)
P 		204
C 752.9
(1.9)
P 		600
(-2.8)
P 		767.8
(2.4)
P 		787.8
(3)
P 		667.7
(-0.7)
P 		592.3
(-3)
P 		196
avr 753.1
(3) 		694.9
(0.6) 		740.8
(2.5) 		744.2
(2.6) 		606.9
(-3) 		651.5
(-1.2) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 271.1
(3)
P 		188.1
(-1.2)
P 		152.3
(-3)
P 		179.2
(-1.6)
P 		119
B 222.6
(3)
P 		208.8
(1.6)
P 		163.6
(-3)
P 		197.3
(0.4)
P 		59
C 299.6
(3)
P 		242.6
(-1)
P 		255
(-0.1)
P 		214
(-3)
P 		86
avr 264.4
(3) 		213.2
(-1.1) 		190.3
(-3) 		196.8
(-2.5) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 144
(-3)
P 		267.1
(3)
P 		177.4
(-1.4)
P 		167.7
(-1.8)
P 		173.2
(-1.6)
P 		170.2
(-1.7)
P 		123
B 252.3
(3)
P 		244.2
(2.5)
P 		155.5
(-3)
P 		207.5
(0.2)
P 		235.3
(1.9)
P 		247.3
(2.7)
P 		97
C 279.1
(3)
P 		183.1
(-1.8)
P 		195.4
(-1.2)
P 		158.4
(-3)
P 		216.1
(-0.1)
P 		198.3
(-1)
P 		121
avr 225.1
(2.3) 		231.5
(3) 		176.1
(-3) 		177.9
(-2.8) 		208.2
(0.5) 		205.3
(0.2) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186210_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4556
Sequence Type Exemplar sequence
Representative Public ID C01B12.2 NCBI
Target Description C01B12.2 /REP_DB=WormBase Gene ID /WP=CE07790 /TR=O17208 /GB=AAB70975.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061233(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061233 NCBI Caenorhabditis elegans C01B12.2 (C01B12.2) mRNA, complete cds. 11/11 None
SNAP00000043177 ENSEMBL cdna:SNAP chromosome:CEL140:II:19538:21842:1 11/11 None
GENEFINDER00000043183 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:19538:21842:1 11/11 None
C01B12.2 ENSEMBL cdna:known chromosome:CEL140:II:19538:22158:1 gene:C01B12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:19270-21472(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01B12.2
Entrez Gene 182061 Entrez gene
WormBase CE32107 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_493634 C01B12.2 [Caenorhabditis elegans] 0.0
blast AAB70975 Hypothetical protein C01B12.2 [Caenorhabditis elegans] 0.0
blast CAE62862 Hypothetical protein CBG07045 [Caenorhabditis briggsae] 1.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR000770 EMBL-EBI SAND 2.5E-25
Pfam IPR000770 EMBL-EBI SAND 4.3E-19
Sequence
Target Sequence 
>C. ELEGANS:186210_AT
ggatctgttccaaaacttccaccaaaaaatgttcaacgtcgtcactcttctgcatcaaca
acatcaaacgtttcacaaacagcgattaatcaattacttcaaggagagctgattaaaaat
ccaaattttctagctgcgttcgctgctcattgtactgctgaaaatcagaaacgacaagaa
gaagctgagagaaagttgcaagaaaaacaaaacgccatcaagtgtctgatggaaaccgac
tcggtcacgttctggaatcaaacgatacaatcaaaaacgtctactgtcgttttggatcga
atttctatggagctcggttcgttggctcagaatctgatttctggtcgtgattttgcggcg
agttcgtctaaaatcatccaggtacttcaagttctcggcttgtcggacaccgtttctcgg
gaaatgtgtggtcaattcattcttccatcgtccgtgtcaactaatgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCTGTTCCAAAACTTCCACCAA 489 511 628 Antisense
AAATGTTCAACGTCGTCACTCTTCT 215 121 654 Antisense
AATCCAAATTTTCTAGCTGCGTTCG 239 161 745 Antisense
TTCGCTGCTCATTGTACTGCTGAAA 190 695 766 Antisense
GACTCGGTCACGTTCTGGAATCAAA 132 375 865 Antisense
TGGAGCTCGGTTCGTTGGCTCAGAA 220 549 935 Antisense
GATTTCTGGTCGTGATTTTGCGGCG 455 425 963 Antisense
GCGGCGAGTTCGTCTAAAATCATCC 199 293 982 Antisense
TTCAAGTTCTCGGCTTGTCGGACAC 41 685 1013 Antisense
TGTCGGACACCGTTTCTCGGGAAAT 709 557 1028 Antisense
TCCATCGTCCGTGTCAACTAATGTT 279 589 1071 Antisense
Sequence Source Affymetrix Proprietary Database