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[186209_s_at]

Description Y38E10A.6 /REP_DB=WormBase Gene ID /WP=CE28115 /TR=Q9U2M6 /GB=CAB60334.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 48      6grp_total > 48      4grp_total > 54      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 337
1 2 3 4 range
A 466.9
(3)
P 		412.6
(0.6)
P 		365.6
(-1.4)
A 		329.5
(-3)
A 		137
B 528.9
(3)
P 		317.1
(-2)
A 		366
(-0.8)
M 		272.9
(-3)
A 		256
C 507.5
(3)
P 		315.4
(-0.7)
A 		342.5
(-0.1)
P 		192.3
(-3)
A 		315
avr 501.1
(3) 		348.4
(-0.9) 		358
(-0.6) 		264.9
(-3) 		236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 324
1 2 3 4 5 6 range
A 558.3
(1.9)
P 		433.9
(-0.4)
P 		293
(-3)
P 		363.1
(-1.7)
P 		363.5
(-1.7)
P 		617.2
(3)
P 		324
B 461.3
(3)
P 		371.8
(-0.2)
P 		356.2
(-0.8)
P 		310.8
(-2.4)
P 		295.2
(-3)
P 		421.7
(1.6)
P 		166
C 568.7
(3)
P 		324.1
(-2.8)
P 		446.6
(0.1)
M 		314.5
(-3)
M 		435.7
(-0.1)
P 		428.6
(-0.3)
P 		254
avr 529.4
(3) 		376.6
(-1.6) 		365.3
(-1.9) 		329.5
(-3) 		364.8
(-1.9) 		489.2
(1.8) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 170
(3)
P 		89.6
(-1)
P 		95.6
(-0.7)
A 		48.2
(-3)
A 		122
B 168.7
(3)
P 		78.3
(-1.9)
A 		84.8
(-1.6)
M 		58.2
(-3)
A 		111
C 168
(3)
P 		90.7
(-0.4)
A 		119.4
(0.8)
P 		32.4
(-3)
A 		136
avr 168.9
(3) 		86.2
(-1) 		99.9
(-0.4) 		46.3
(-3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 102.9
(-0.4)
P 		154.3
(3)
P 		63.8
(-3)
P 		92.1
(-1.1)
P 		109.7
(0)
P 		150.3
(2.7)
P 		91
B 160.5
(3)
P 		123.8
(0.2)
P 		86.5
(-2.7)
P 		82.3
(-3)
P 		119.9
(-0.1)
P 		157.2
(2.7)
P 		78
C 210.8
(3)
P 		98.9
(-1.5)
P 		113.7
(-0.9)
M 		63.2
(-3)
M 		141
(0.2)
P 		143.5
(0.3)
P 		148
avr 158.1
(3) 		125.7
(0.5) 		88
(-2.3) 		79.2
(-3) 		123.5
(0.4) 		150.3
(2.4) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186209_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3204
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.6 NCBI
Target Description Y38E10A.6 /REP_DB=WormBase Gene ID /WP=CE28115 /TR=Q9U2M6 /GB=CAB60334.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027258(11), NM_001027257(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027258 NCBI Caenorhabditis elegans Y38E10A.6b (Y38E10A.6) mRNA, complete cds. 11/11 None
NM_001027257 NCBI Caenorhabditis elegans Y38E10A.6a (Y38E10A.6) mRNA, complete cds. 11/11 None
SNAP00000017429 ENSEMBL cdna:SNAP chromosome:CEL140:II:12582277:12603581:-1 11/11 None
GENEFINDER00000017474 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12582277:12603581:-1 11/11 None
Y38E10A.6b ENSEMBL cdna:known chromosome:CEL140:II:12582110:12603581:-1 gene:Y38E10A.6 11/11 None
Y38E10A.6a ENSEMBL cdna:known chromosome:CEL140:II:12582277:12603581:-1 gene:Y38E10A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12582273-12595142(-) 97.26 100.0
Public Domain and Genome References
Ensembl Y38E10A.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE46683 Hypothetical protein Y38E10A.6b [Caenorhabditis elegans] ref|NP_001022429.1| Y38E10A.6b [Caenorhabditis elegans] 0.0
blast CAB60334 Hypothetical protein Y38E10A.6a [Caenorhabditis elegans] ref|NP_001022428.1| Y38E10A.6a [Caenorhabditis elegans] 0.0
blast T26656 hypothetical protein Y38E10A.f - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 1.70000004768372
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 1.60000002384186
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 1.20000004768372
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 2.29999995231628
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 0.28999999165535
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 0.280000001192093
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 1.89999997615814
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 0.00899999961256981
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 0.00800000037997961
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 0.0230000000447035
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 0.25
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 0.270000010728836
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 0.00100000004749745
Pfam IPR001356 EMBL-EBI Homeobox 1.6E-4
Pfam IPR001356 EMBL-EBI Homeobox 5.1E-4
Pfam IPR001356 EMBL-EBI Homeobox 16.0
Pfam IPR001356 EMBL-EBI Homeobox 0.58
Pfam IPR001356 EMBL-EBI Homeobox 23.0
Pfam IPR001356 EMBL-EBI Homeobox 0.51
Pfam IPR001356 EMBL-EBI Homeobox 20.0
Pfam IPR001356 EMBL-EBI Homeobox 0.095
Pfam IPR001356 EMBL-EBI Homeobox 28.0
Pfam IPR001356 EMBL-EBI Homeobox 5.1E-4
Pfam IPR001356 EMBL-EBI Homeobox 16.0
Pfam IPR001356 EMBL-EBI Homeobox 0.58
Pfam IPR001356 EMBL-EBI Homeobox 23.0
Pfam IPR001356 EMBL-EBI Homeobox 0.51
Pfam IPR001356 EMBL-EBI Homeobox 1.6E-4
Pfam IPR001356 EMBL-EBI Homeobox 5.1E-4
Pfam IPR001356 EMBL-EBI Homeobox 16.0
Pfam IPR001356 EMBL-EBI Homeobox 0.58
Pfam IPR001356 EMBL-EBI Homeobox 23.0
Pfam IPR001356 EMBL-EBI Homeobox 0.51
Pfam IPR001356 EMBL-EBI Homeobox 20.0
Sequence
Target Sequence 
>C. ELEGANS:186209_S_AT
accacctctgacgacggatttttcgattttaacattgaaaatcctgttgctctaactcaa
actcgaaaatccgctcgtcgcccggctccaaaaaattacgacgattttttcggcgaagac
gctgatttggacgagcttctgcgggctacaaccaccaacccaccggcggctccagtggca
actgctttcactaaaattggctcacacatcatcatctcgcccagccaaaagcataagtca
actcaaacaactgattttggtccaaaagaggctccaaaagaagctccaaaagctgtggtg
gaaactctcgaaccggacacatcggatgaggaattcgttgccgatgagctctttgagttc
aatttggacgattttgagccccgtccggataggaagcgcccagccgggccgcccatctat
cgcccgccaccgaaacagccaaagctgagcatctccaagacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCACCTCTGACGACGGATTTTTCG 47 85 2290 Antisense
ATCCTGTTGCTCTAACTCAAACTCG 696 37 2330 Antisense
TCAAACTCGAAAATCCGCTCGTCGC 617 629 2346 Antisense
TGATTTGGACGAGCTTCTGCGGGCT 589 563 2412 Antisense
CTCCAGTGGCAACTGCTTTCACTAA 693 235 2459 Antisense
AAATTGGCTCACACATCATCATCTC 535 115 2483 Antisense
TCATCTCGCCCAGCCAAAAGCATAA 28 621 2501 Antisense
GAAACTCTCGAACCGGACACATCGG 179 357 2590 Antisense
ATTCGTTGCCGATGAGCTCTTTGAG 534 9 2622 Antisense
TTTGAGCCCCGTCCGGATAGGAAGC 423 615 2662 Antisense
GCCAAAGCTGAGCATCTCCAAGACC 396 277 2727 Antisense
Sequence Source Affymetrix Proprietary Database