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[186208_at] 7TM chemoreceptor, srt family

Description C03A7.10 /REP_DB=WormBase Gene ID /WP=CE07868 /TR=O16505 /GB=AAB66004.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 16      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 6.6
(-2.9)
A 		5.4
(-3)
A 		8.7
(-2.6)
A 		55
(3)
A 		50
B 6.2
(-1.7)
A 		20.8
(3)
A 		2.3
(-3)
A 		6
(-1.8)
A 		19
C 8.7
(-2.1)
A 		4.4
(-3)
A 		32.4
(3)
A 		13
(-1.2)
A 		28
avr 7.2
(-3) 		10.2
(-2) 		14.5
(-0.5) 		24.7
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4.4
(1.1)
A 		2.4
(-2.2)
A 		5.6
(3)
A 		2.4
(-2.2)
A 		2.4
(-2.2)
A 		1.9
(-3)
A 		4
B 1.9
(-3)
A 		2
(-2.3)
A 		1.9
(-3)
A 		2.1
(-1.7)
A 		1.9
(-3)
A 		2.8
(3)
A 		1
C 17.1
(3)
A 		4.1
(-1.9)
A 		1.8
(-2.8)
A 		2.5
(-2.5)
A 		1.2
(-3)
A 		3.4
(-2.2)
A 		16
avr 7.8
(3) 		2.8
(-2) 		3.1
(-1.7) 		2.3
(-2.5) 		1.8
(-3) 		2.7
(-2.1) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.4
(-1.9)
A 		1.2
(-3)
A 		2.3
(-2)
A 		8
(3)
A 		7
B 2
(-1)
A 		5.1
(3)
A 		0.5
(-3)
A 		1.3
(-2)
A 		5
C 2.9
(-2)
A 		1.3
(-3)
A 		11.3
(3)
A 		2.2
(-2.5)
A 		10
avr 2.4
(-3) 		2.5
(-2.7) 		4.7
(3) 		3.8
(0.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.8
(-0.4)
A 		0.9
(0.4)
A 		1.2
(3)
A 		0.6
(-2.1)
A 		0.7
(-1.3)
A 		0.5
(-3)
A 		1
B 0.7
(-0.6)
A 		0.7
(-0.6)
A 		0.5
(-3)
A 		0.6
(-1.8)
A 		0.8
(0.6)
A 		1
(3)
A 		1
C 6.3
(3)
A 		1.3
(-2.1)
A 		0.5
(-2.9)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		1.1
(-2.3)
A 		6
avr 2.6
(3) 		1
(-1.8) 		0.7
(-2.7) 		0.6
(-3) 		0.6
(-3) 		0.9
(-2.1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186208_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15571
Sequence Type Exemplar sequence
Representative Public ID C03A7.10 NCBI
Target Description C03A7.10 /REP_DB=WormBase Gene ID /WP=CE07868 /TR=O16505 /GB=AAB66004.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071986(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071986 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-65) (srt-65) mRNA, complete cds. 11/11 None
GENEFINDER00000035303 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5170848:5181268:-1 9/11 None
C03A7.10 ENSEMBL cdna:known chromosome:CEL140:V:5171274:5172966:-1 gene:C03A7.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035282 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5171273-5172966(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-65
Ensembl C03A7.10
Entrez Gene 182141 Entrez gene
SwissProt O16505 EMBL-EBI
WormBase CE07868 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66005 Udp-glucuronosyltransferase protein 51 [Caenorhabditis elegans] ref|NP_504388.2| C03A7.11 [Caenorhabditis elegans] 0.0
blast CAE64089 Hypothetical protein CBG08694 [Caenorhabditis briggsae] 0.0
blast AAB66004 Serpentine receptor, class t protein 65 [Caenorhabditis elegans] ref|NP_504387.1| Serpentine Receptor, class T family member (srt-65) [Caenorhabditis elegans] 1.0E-151
blast CAE56262 Hypothetical protein CBG23906 [Caenorhabditis briggsae] 1.0E-124
blast AAB66003 Serpentine receptor, class t protein 64 [Caenorhabditis elegans] ref|NP_504386.2| Serpentine Receptor, class T family member (srt-64) [Caenorhabditis elegans] 1.0E-72
blast CAE64087 Hypothetical protein CBG08692 [Caenorhabditis briggsae] 5.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 3.7E-24
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 2.8E-36
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.1E-14
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.9E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504387.1 4 109-131,141-163,170-192,222-244
C03A7.10 4 109-131,141-163,170-192,222-244
GENEFINDER00000035303 6 222-244,738-760,773-792,802-824,854-876,891-913
Sequence
Target Sequence 
>C. ELEGANS:186208_AT
ttgagtaccctggcaattcttccaaaaatgacaaaattcccaagtgatcttcgagaaaat
atatcttacaaactattgaatttactcaattattgtgatgtttctcaagctgtgtgtcat
ttctttaccgggcttttcctcattttcccatttattacagaaaacattcagtacattgtt
aggatctttggctgtactgctaacaccctctggcttgccacgtttgtgataatggcaata
cttgcgagtactcgaattggaattgctttctttaaaataaaacctacaaaatggacaatt
tggatgataatatgcctcatcattggatctgtgtatatctttctggtatggatagttgga
tgtatcactcaaaacttccaactcataggaccagcttggtcatacgacatggaagtgaag
tttgcgggcctctttgctgagctcgagttggtgttatgctttccaactcttgctctcagc
ttctgctcttacatccttatcatctacagcatttacaaggttttccaaactttttggaaa
cgcgacggttctcacgacatacatggctctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAGTACCCTGGCAATTCTTCCAA 62 705 229 Antisense
AAGCTGTGTGTCATTTCTTTACCGG 255 147 335 Antisense
TTTCCTCATTTTCCCATTTATTACA 545 669 363 Antisense
GATCTTTGGCTGTACTGCTAACACC 370 419 411 Antisense
CTCTGGCTTGCCACGTTTGTGATAA 635 231 436 Antisense
TATGCCTCATCATTGGATCTGTGTA 573 655 539 Antisense
GTATCACTCAAAACTTCCAACTCAT 10 455 590 Antisense
ATGGAAGTGAAGTTTGCGGGCCTCT 217 53 637 Antisense
GCTCTTACATCCTTATCATCTACAG 285 301 713 Antisense
TTTGGAAACGCGACGGTTCTCACGA 523 653 761 Antisense
TTCTCACGACATACATGGCTCTTTT 116 691 777 Antisense
Sequence Source Affymetrix Proprietary Database