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[186206_at]

Description H04M03.7 /REP_DB=WormBase Gene ID /WP=CE20926 /TR=Q9TYR6 /GB=AAD12793.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 06      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 21.6
(-1.3)
A 		5.6
(-3)
A 		30.8
(-0.3)
A 		62
(3)
A 		56
B 42.3
(3)
P 		19.4
(-3)
A 		33.3
(0.6)
A 		35.5
(1.2)
A 		23
C 45.7
(0.4)
A 		14.5
(-3)
A 		20.4
(-2.4)
A 		70.2
(3)
P 		56
avr 36.5
(0.3) 		13.2
(-3) 		28.2
(-0.9) 		55.9
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 47.6
(3)
A 		1.9
(-3)
A 		45.8
(2.8)
A 		25.4
(0.1)
P 		27.9
(0.4)
A 		1.6
(-3)
A 		46
B 24.5
(0.4)
P 		29.7
(1.3)
P 		10
(-2.2)
A 		39.1
(3)
A 		25.2
(0.5)
A 		5.8
(-3)
A 		33
C 15.2
(-1.2)
A 		16.1
(-1.1)
A 		17
(-1)
A 		45.8
(3)
A 		2.2
(-3)
A 		30.3
(0.9)
A 		44
avr 29.1
(1.1) 		15.9
(-2.2) 		24.3
(-0.1) 		36.8
(3) 		18.4
(-1.6) 		12.6
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 7.9
(2.1)
A 		1.2
(-3)
A 		8
(2.2)
A 		9.1
(3)
A 		8
B 13.5
(3)
P 		4.8
(-3)
A 		7.7
(-1)
A 		7.6
(-1.1)
A 		9
C 15.1
(3)
A 		4.2
(-3)
A 		7.1
(-1.4)
A 		11.8
(1.2)
P 		11
avr 12.2
(3) 		3.4
(-3) 		7.6
(-0.1) 		9.5
(1.2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 8.8
(2.3)
A 		0.7
(-2.8)
A 		10
(3)
A 		6.4
(0.8)
P 		8.4
(2)
A 		0.4
(-3)
A 		10
B 8.5
(1.6)
P 		9.9
(2.6)
P 		2.4
(-2.9)
A 		10.4
(3)
A 		10.2
(2.9)
A 		2.2
(-3)
A 		8
C 5.6
(0.1)
A 		4.9
(-0.3)
A 		4.3
(-0.7)
A 		9.2
(2.4)
A 		0.7
(-3)
A 		10.1
(3)
A 		9
avr 7.6
(1.5) 		5.2
(-1.7) 		5.6
(-1.1) 		8.7
(3) 		6.4
(-0.1) 		4.2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186206_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10645
Sequence Type Exemplar sequence
Representative Public ID H04M03.7 NCBI
Target Description H04M03.7 /REP_DB=WormBase Gene ID /WP=CE20926 /TR=Q9TYR6 /GB=AAD12793.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000034806 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5871961:5877331:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
H04M03.7 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5874315-5875650(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12794 Serpentine receptor, class v protein 21 [Caenorhabditis elegans] ref|NP_500880.1| Serpentine Receptor, class V family member (srv-21) [Caenorhabditis elegans] 1.0E-173
blast AAD12792 Serpentine receptor, class v protein 19 [Caenorhabditis elegans] ref|NP_500878.1| Serpentine Receptor, class V family member (srv-19) [Caenorhabditis elegans] 1.0E-132
blast T33860 hypothetical protein H04M03.7 - Caenorhabditis elegans 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 4.7E-77
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034806 19 23-45,58-80,95-117,147-169,192-214,235-257,277-299,344-366,391-413,426-448,468-487,552-574,589-611,624-643,671-693,713-732,758-777,797-819,839-856
Sequence
Target Sequence 
>C. ELEGANS:186206_AT
ggcaacatttcagacaacattttacactattttaattcagcattgcacagttgatatttt
tgcgttgtcgttttatggattaatgcgggtatcatttgtactaattccacatattttata
cgagtttcgagattgtggaattgcagcagttcggtacaatggcatttactggtttatcaa
tattcgttgctatggaataacattaatgactgttcaacgatatttcgttataacaaagac
tgctgatagaagtactttgtttatgcagtcgttgaaaccgtggaaaattgttttaattta
ctgggttcctccaattattttcagtgcaacattttatttgaatataagaataacctatga
ttctccagtgaaaatgacgtatagtatggatccaagttatatcacgagatcaaccagaac
agcatttttctacattttgacttgttatatgatttgtctgtatctccacaatcgaatgga
tttttgtaccttcgtttattcgtttttattctttttcaataatgttttaattcatgtttt
tctaatttcactgtcaaatggttttcctggaaataacctcactaatcatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAACATTTCAGACAACATTTTAC 114 535 246 Antisense
AGTTGATATTTTTGCGTTGTCGTTT 380 65 294 Antisense
GGGTATCATTTGTACTAATTCCACA 560 495 332 Antisense
GCAGCAGTTCGGTACAATGGCATTT 589 313 388 Antisense
GGGTTCCTCCAATTATTTTCAGTGC 72 497 548 Antisense
AATAACCTATGATTCTCCAGTGAAA 242 171 594 Antisense
CGAGATCAACCAGAACAGCATTTTT 105 251 650 Antisense
GATTTGTCTGTATCTCCACAATCGA 282 427 696 Antisense
CATGTTTTTCTAATTTCACTGTCAA 384 209 778 Antisense
TTCACTGTCAAATGGTTTTCCTGGA 686 681 792 Antisense
TGGAAATAACCTCACTAATCATCAT 111 547 813 Antisense
Sequence Source Affymetrix Proprietary Database