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[186204_at]

Description E01H11.2 /REP_DB=WormBase Gene ID /WP=CE02587 /TR=Q19024 /GB=AAA68709.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 37      6grp_cgc > 16      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 43.8
(1.4)
M 		32.1
(-3)
A 		32.6
(-2.8)
A 		47.9
(3)
A 		16
B 41
(1)
A 		57.8
(3)
A 		7.7
(-3)
A 		16.5
(-1.9)
A 		50
C 113.8
(3)
P 		53.8
(-0.3)
A 		5.2
(-3)
A 		40.8
(-1)
A 		109
avr 66.2
(3) 		47.9
(0.8) 		15.2
(-3) 		35.1
(-0.7) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 41.1
(3)
A 		34.8
(1.9)
A 		26
(0.5)
A 		14.7
(-1.4)
A 		5.8
(-2.9)
A 		5.3
(-3)
A 		36
B 33.7
(3)
A 		3.7
(-2.8)
A 		2.8
(-3)
A 		15.7
(-0.5)
A 		3.9
(-2.8)
A 		17.3
(-0.2)
A 		31
C 19.3
(-0.3)
A 		8.7
(-2.2)
A 		5.7
(-2.7)
A 		5.7
(-2.7)
A 		4
(-3)
A 		38.5
(3)
A 		35
avr 31.4
(3) 		15.7
(-0.5) 		11.5
(-1.5) 		12
(-1.3) 		4.6
(-3) 		20.4
(0.5) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 15.9
(3)
M 		7
(-3)
A 		8.5
(-2)
A 		7
(-3)
A 		9
B 13.1
(2.4)
A 		14.3
(3)
A 		1.8
(-3)
A 		3.5
(-2.2)
A 		13
C 37.7
(3)
P 		15.5
(-0.7)
A 		1.8
(-3)
A 		6.9
(-2.1)
A 		36
avr 22.2
(3) 		12.3
(-0.3) 		4
(-3) 		5.8
(-2.4) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.6
(0.4)
A 		12.4
(3)
A 		5.7
(-0.6)
A 		3.7
(-1.7)
A 		1.7
(-2.8)
A 		1.3
(-3)
A 		11
B 11.7
(3)
A 		1.2
(-2.7)
A 		0.7
(-3)
A 		4.2
(-1.1)
A 		1.6
(-2.5)
A 		6.5
(0.2)
A 		11
C 7.2
(0.1)
A 		2.6
(-2.3)
A 		1.4
(-2.9)
A 		1.2
(-3)
A 		1.3
(-2.9)
A 		12.9
(3)
A 		12
avr 8.8
(3) 		5.4
(0.2) 		2.6
(-2.1) 		3
(-1.8) 		1.5
(-3) 		6.9
(1.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186204_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17062
Sequence Type Exemplar sequence
Representative Public ID E01H11.2 NCBI
Target Description E01H11.2 /REP_DB=WormBase Gene ID /WP=CE02587 /TR=Q19024 /GB=AAA68709.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029347(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029347 NCBI Caenorhabditis elegans Protein Kinase C family member (pkc-2) (pkc-2) mRNA, complete cds. 11/11 None
E01H11.1c ENSEMBL cdna:known chromosome:CEL140:X:9376201:9385656:1 gene:E01H11.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040110 6/11 Cross Hyb Matching Probes None
GENEFINDER00000040113 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181166 3 1 NM_001029345 175780_at (11), 175781_s_at (11)
NM_001029346 175779_at (11), 192006_s_at (11)
NM_001029347 175781_s_at (11), 186204_at (11), 192005_at (11), 192006_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9376200-9377041(+) 100.0 100.0
Public Domain and Genome References
Ensembl E01H11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68709 Protein kinase c protein 2, isoform c [Caenorhabditis elegans] ref|NP_001024518.1| Protein Kinase C family member (pkc-2) [Caenorhabditis elegans] 0.0
blast T15903 protein kinase C homolog - Caenorhabditis elegans 0.0
blast CAE69829 Hypothetical protein CBG16150 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-68
hanks 1.2.3 AGC group; AGC I Diacylglycerol-activated/phospholipid-dependent protein kinase C (PKC) family; DPKC53b 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 1.6E-37
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 2.0E-24
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 6.2E-24
Pfam IPR000719 EMBL-EBI Protein kinase 3.0E-81
Pfam IPR000961 EMBL-EBI Protein kinase C-terminal domain 2.7E-21
Pfam IPR000961 EMBL-EBI Protein kinase C-terminal domain 7.5E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024518.1 3 588-610,824-843,848-870
E01H11.1c 3 588-610,824-843,848-870
Sequence
Target Sequence 
>C. ELEGANS:186204_AT
atgagcctacgaccaaagcaaaagtcatcatccacttcggtgttcttaaagtctcacaag
ttttcgttaacatctcatattttaaggaaggcaaaaaagcgcgagacgatggatagtgca
gagcgtcgacgatccgagaccgatattggtggtggtcccagaaatagcgctgatgctcgg
ccgagcctcgatctgtcgtccgatcctatgctcgagtcgaatcttgcacttcgtaaacta
tctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGCCTACGACCAAAGCAAAAGT 406 45 13 Antisense
TCATCATCCACTTCGGTGTTCTTAA 108 621 37 Antisense
TTCGGTGTTCTTAAAGTCTCACAAG 559 695 48 Antisense
GTCTCACAAGTTTTCGTTAACATCT 506 469 63 Antisense
AAGCGCGAGACGATGGATAGTGCAG 621 149 109 Antisense
GATAGTGCAGAGCGTCGACGATCCG 34 425 124 Antisense
ACCGATATTGGTGGTGGTCCCAGAA 206 89 151 Antisense
CAGAAATAGCGCTGATGCTCGGCCG 537 205 171 Antisense
CCGATCCTATGCTCGAGTCGAATCT 516 263 212 Antisense
GCTCGAGTCGAATCTTGCACTTCGT 253 299 222 Antisense
ATCTTGCACTTCGTAAACTATCTGA 133 31 233 Antisense
Sequence Source Affymetrix Proprietary Database