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[186203_at]

Description W02F12.3 /REP_DB=WormBase Gene ID /WP=CE14476 /TR=O45146 /GB=AAC04459.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      6grp_total > 88      4grp_total > 11      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 104.7
(-0.4)
A 		83.4
(-2.3)
P 		76.2
(-3)
M 		142.3
(3)
A 		66
B 61.4
(-3)
A 		73.2
(-1.5)
A 		74.1
(-1.4)
A 		108.6
(3)
A 		47
C 64.6
(-2.4)
A 		81.5
(-1.5)
A 		53.4
(-3)
A 		165.9
(3)
A 		113
avr 76.9
(-2.2) 		79.4
(-2) 		67.9
(-3) 		138.9
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1206
1 2 3 4 5 6 range
A 87.9
(-3)
P 		85.9
(-3)
A 		91
(-3)
A 		124.2
(-2.8)
P 		688.4
(0.1)
P 		1265.4
(3)
P 		1180
B 62.8
(-3)
A 		59.2
(-3)
P 		68.4
(-2.9)
A 		115.6
(-2.7)
P 		598.6
(0)
P 		1134.4
(3)
P 		1075
C 85.2
(-2.9)
A 		65.2
(-3)
A 		84.5
(-2.9)
P 		115.5
(-2.7)
A 		681.5
(0.4)
P 		1149.8
(3)
P 		1085
avr 78.6
(-3) 		70.1
(-3) 		81.3
(-2.9) 		118.4
(-2.7) 		656.2
(0.2) 		1183.2
(3) 		1113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 38.1
(3)
A 		18.1
(-3)
P 		19.9
(-2.5)
M 		20.8
(-2.2)
A 		20
B 19.6
(-0.6)
A 		18.1
(-2.1)
A 		17.2
(-3)
A 		23.1
(3)
A 		6
C 21.4
(-1.2)
A 		23.4
(0.1)
A 		18.6
(-3)
A 		28
(3)
A 		9
avr 26.4
(3) 		19.9
(-2) 		18.6
(-3) 		24
(1.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 407
1 2 3 4 5 6 range
A 16.2
(-3)
P 		30.5
(-2.7)
A 		19.8
(-2.9)
A 		31.5
(-2.7)
P 		207.7
(0.9)
P 		308.1
(3)
P 		292
B 21.9
(-2.9)
A 		19.7
(-3)
P 		16.6
(-3)
A 		30.6
(-2.8)
P 		243.2
(0.3)
P 		423
(3)
P 		406
C 31.6
(-2.8)
A 		19.9
(-3)
A 		21.5
(-3)
P 		23.2
(-2.9)
A 		220.5
(0.3)
P 		384.9
(3)
P 		365
avr 23.2
(-2.9) 		23.4
(-2.9) 		19.3
(-3) 		28.4
(-2.8) 		223.8
(0.5) 		372
(3) 		353
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186203_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12270
Sequence Type Exemplar sequence
Representative Public ID W02F12.3 NCBI
Target Description W02F12.3 /REP_DB=WormBase Gene ID /WP=CE14476 /TR=O45146 /GB=AAC04459.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072297(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072297 NCBI Caenorhabditis elegans W02F12.3 (W02F12.3) mRNA, complete cds. 11/11 None
SNAP00000016553 ENSEMBL cdna:SNAP chromosome:CEL140:V:6705681:6706995:1 11/11 None
GENEFINDER00000016561 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6705681:6706995:1 11/11 None
W02F12.3 ENSEMBL cdna:known chromosome:CEL140:V:6705681:6707110:1 gene:W02F12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6705681-6706996(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02F12.3
Entrez Gene 179061 Entrez gene
SwissProt O45146 EMBL-EBI
WormBase CE14476 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504698 W02F12.3 [Caenorhabditis elegans] gb|AAC04459.1| Hypothetical protein W02F12.3 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186203_AT
ttccgaagcttccatggccaatcaaactccgtctgaacagagttctagagatcgagactc
gcagtgctcctgcccaagtcgtgctcctgtcgaggaccctgtggcatcttttgaattgaa
tgataaagatagcatctcaatcccttcagactctggagcttcgcttagaacaggatccgc
aggttccggaggagagcctgaagttccactggctcaaaacaacccggaagcaagaggaag
aagagagtggctgcaacatcaaaacgctgttggttcaggcgacacaccaagcacgagacc
atcaactgcggaaaataactctgaccacggtgaaggaccttcggagccacaaaatcgtcc
tccaagtcgacctgaagacgacgacgacgacagtaataagccatcaacctcaggctttat
tcgtaagggaaagtcactgagccgtcaaatgaaagtctctgtggctcatttttggaatga
atataagaccgtttatccatctgaacgccttcctgcaccaaccacctcgcctggaagccc
aaaaatcaacgacggaaaagagtgctggctggactcgttcaagaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCGAAGCTTCCATGGCCAATCAA 293 699 561 Antisense
GAGATCGAGACTCGCAGTGCTCCTG 686 395 608 Antisense
GACCCTGTGGCATCTTTTGAATTGA 679 381 655 Antisense
TCTCAATCCCTTCAGACTCTGGAGC 82 613 695 Antisense
GAGCTTCGCTTAGAACAGGATCCGC 516 387 716 Antisense
GAGGAGAGCCTGAAGTTCCACTGGC 395 403 749 Antisense
GAAGGACCTTCGGAGCCACAAAATC 20 333 892 Antisense
GCCATCAACCTCAGGCTTTATTCGT 596 279 960 Antisense
AAGTCTCTGTGGCTCATTTTTGGAA 31 159 1013 Antisense
AGACCGTTTATCCATCTGAACGCCT 193 71 1046 Antisense
TGCTGGCTGGACTCGTTCAAGAACC 198 583 1123 Antisense
Sequence Source Affymetrix Proprietary Database