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[186201_at]

Description H43I07.1 /REP_DB=WormBase Gene ID /WP=CE21007 /TR=Q9UAZ0 /GB=AAD14757.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 17      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 91
(-3)
A 		93.2
(-2.7)
A 		101.9
(-1.4)
A 		131.4
(3)
A 		40
B 60.3
(-3)
A 		95.7
(0.2)
A 		110.3
(1.5)
A 		127.6
(3)
A 		67
C 98.1
(-1.2)
A 		115.1
(-0.1)
A 		70.6
(-3)
A 		163.4
(3)
A 		93
avr 83.1
(-3) 		101.3
(-1.1) 		94.3
(-1.8) 		140.8
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 143.7
(3)
A 		96.3
(-2.5)
A 		95.1
(-2.6)
A 		91.8
(-3)
A 		101.1
(-1.9)
A 		129.8
(1.4)
A 		52
B 51.1
(-3)
A 		74.9
(-1)
A 		119
(2.7)
A 		86.1
(-0.1)
A 		122.9
(3)
A 		116.3
(2.4)
A 		72
C 98.1
(0)
A 		85
(-1.4)
A 		97.2
(-0)
A 		69.7
(-3)
A 		111
(1.4)
A 		125.6
(3)
A 		56
avr 97.6
(-0.8) 		85.4
(-2.6) 		103.8
(0.1) 		82.5
(-3) 		111.7
(1.2) 		123.9
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 33.1
(3)
A 		20.2
(-2.6)
A 		26.7
(0.2)
A 		19.2
(-3)
A 		14
B 19.2
(-3)
A 		23.6
(0.3)
A 		25.6
(1.8)
A 		27.2
(3)
A 		8
C 32.5
(2.6)
A 		33.1
(3)
A 		24.6
(-3)
A 		27.6
(-0.9)
A 		9
avr 28.3
(3) 		25.6
(-1.5) 		25.6
(-1.5) 		24.7
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 26.5
(-0.4)
A 		34.3
(3)
A 		20.7
(-3)
A 		23.3
(-1.9)
A 		30.5
(1.3)
A 		31.6
(1.8)
A 		14
B 17.8
(-3)
A 		24.9
(-1.7)
A 		28.9
(-0.9)
A 		22.8
(-2.1)
A 		49.9
(3)
A 		43.4
(1.8)
A 		32
C 36.4
(1.8)
A 		25.9
(-0.5)
A 		24.7
(-0.7)
A 		14
(-3)
A 		35.9
(1.7)
A 		42
(3)
A 		28
avr 26.9
(-0.8) 		28.4
(-0.3) 		24.8
(-1.5) 		20
(-3) 		38.8
(2.9) 		39
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186201_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15258
Sequence Type Exemplar sequence
Representative Public ID H43I07.1 NCBI
Target Description H43I07.1 /REP_DB=WormBase Gene ID /WP=CE21007 /TR=Q9UAZ0 /GB=AAD14757.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071766(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071766 NCBI Caenorhabditis elegans H43I07.1 (H43I07.1) mRNA, complete cds. 11/11 None
SNAP00000022206 ENSEMBL cdna:SNAP chromosome:CEL140:V:4195575:4208180:1 11/11 None
H43I07.1 ENSEMBL cdna:known chromosome:CEL140:V:4204604:4208180:1 gene:H43I07.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022208 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4204603-4208180(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H43I07.1
Entrez Gene 178824 Entrez gene
SwissProt Q9UAZ0 EMBL-EBI
WormBase CE21007 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T34006 hypothetical protein H43I07.2 - Caenorhabditis elegans 0.0
blast AAL38961 Hypothetical protein H43I07.2 [Caenorhabditis elegans] ref|NP_504166.2| H43I07.2 [Caenorhabditis elegans] 0.0
blast CAE58323 Hypothetical protein CBG01436 [Caenorhabditis briggsae] 1.0E-174
blast AAD14757 Hypothetical protein H43I07.1 [Caenorhabditis elegans] ref|NP_504167.1| H43I07.1 [Caenorhabditis elegans] 1.0E-128
blast CAE58322 Hypothetical protein CBG01435 [Caenorhabditis briggsae] 1.0E-105
blast XP_784598 PREDICTED: similar to Putative OPA3-like protein CG13603 [Strongylocentrotus purpuratus] 8.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR010754 EMBL-EBI Optic atrophy 3 2.0E-7
Pfam IPR001700 EMBL-EBI RNA polymerase, alpha chain, bacterial and organelle 4.5E-56
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 6.2E-24
Pfam IPR008193 EMBL-EBI DNA-directed RNA polymerase, 13 to 16 kDa subunit 1.3E-15
Sequence
Target Sequence 
>C. ELEGANS:186201_AT
agcaacttgtgctcttctcatattcggtcggcgtctttgccggttattacttttatacga
aaatgacgacacctgaatcgctgaaaattgaggattatgaagagtttaagcaacaacagg
agagggcaatcaaggagctccgtctacaagtcgaatcgctcgagcaacggttagcagctc
aacaaaaacgaaatttcttctcacaactaggattttcaaaggaaaatggcgatgagtcac
caccgaaaccaagccagcaggctccaccaccagaaaagccttcagaagagaagaagcctg
ccacagaatcgctgaaacaacgatttcagcgaatctcatcgcttccgatcgacgcagccg
cctcgttgattctcgacgatgaagaatacctcgtcgtacgtcgtggatcttccgttggca
tcgagctctctgtgaattttgcggctcgtggtgatcgtcttcgttaccgtattccttcgc
cgaaacttcgagaatcgtgtgctcagatggctctgaaggaagccgcgtgtcacgtcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAACTTGTGCTCTTCTCATATTC 175 77 233 Antisense
GTCGGCGTCTTTGCCGGTTATTACT 534 281 259 Antisense
CAAGGAGCTCCGTCTACAAGTCGAA 15 185 363 Antisense
TGGCGATGAGTCACCACCGAAACCA 466 545 459 Antisense
CTCCACCACCAGAAAAGCCTTCAGA 194 235 494 Antisense
TCAGCGAATCTCATCGCTTCCGATC 505 625 558 Antisense
TGAAGAATACCTCGTCGTACGTCGT 174 573 612 Antisense
CGTTGGCATCGAGCTCTCTGTGAAT 495 247 645 Antisense
GCTCTCTGTGAATTTTGCGGCTCGT 106 301 657 Antisense
GAATCGTGTGCTCAGATGGCTCTGA 418 329 724 Antisense
GAAGGAAGCCGCGTGTCACGTCATC 634 333 747 Antisense
Sequence Source Affymetrix Proprietary Database