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[186200_s_at]

Description F59G1.1A /REP_DB=WormBase Gene ID /WP=CE07316 /TR=Q21054 /GB=AAK31528.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 54      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 67      6grp_total > 45      4grp_total > 41      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 673
1 2 3 4 range
A 1658.6
(-3)
P 		1981.2
(1.1)
P 		2135.6
(3)
P 		1868.1
(-0.4)
P 		477
B 1463.1
(-3)
P 		2094.9
(2.8)
P 		2042.5
(2.3)
P 		2115.1
(3)
P 		652
C 1676.2
(-3)
P 		2025.2
(2)
P 		2098.1
(3)
P 		1931.3
(0.6)
P 		422
avr 1599.3
(-3) 		2033.8
(2.3) 		2092.1
(3) 		1971.5
(1.5) 		493

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 813
1 2 3 4 5 6 range
A 1529.5
(-2.2)
P 		1725.9
(1.4)
P 		1813
(3)
P 		1509.3
(-2.5)
P 		1484.2
(-3)
P 		1775.1
(2.3)
P 		329
B 1958.3
(2)
P 		1842.6
(1.2)
P 		2092.1
(3)
P 		1760.1
(0.6)
P 		1278.7
(-3)
P 		1658.6
(-0.2)
P 		813
C 1794.4
(3)
P 		1655.2
(1)
P 		1724
(2)
P 		1795.2
(3)
P 		1367.8
(-3)
P 		1726.6
(2)
P 		427
avr 1760.7
(1.6) 		1741.2
(1.4) 		1876.4
(3) 		1688.2
(0.7) 		1376.9
(-3) 		1720.1
(1.1) 		500
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 458
1 2 3 4 range
A 603.9
(3)
P 		430.1
(-0.2)
P 		558.3
(2.2)
P 		273.5
(-3)
P 		330
B 466.6
(-1.6)
P 		517.4
(3)
P 		473.3
(-1)
P 		450.7
(-3)
P 		67
C 554.9
(0.4)
P 		582.3
(0.8)
P 		731.3
(3)
P 		325.7
(-3)
P 		406
avr 541.8
(1.8) 		509.9
(1) 		587.6
(3) 		350
(-3) 		238

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 400
1 2 3 4 5 6 range
A 281.9
(-3)
P 		613.8
(3)
P 		394.8
(-1)
P 		382.8
(-1.2)
P 		447.9
(0)
P 		432.2
(-0.3)
P 		332
B 681.4
(3)
P 		613.3
(1.1)
P 		508
(-1.8)
P 		466.2
(-3)
P 		519.5
(-1.5)
P 		618.5
(1.2)
P 		215
C 665.1
(3)
P 		505.1
(-0.2)
P 		438.8
(-1.5)
P 		361
(-3)
P 		442.6
(-1.4)
P 		578
(1.3)
P 		304
avr 542.8
(1.8) 		577.4
(3) 		447.2
(-1.5) 		403.3
(-3) 		470
(-0.7) 		542.9
(1.8) 		174
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186200_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5897
Sequence Type Exemplar sequence
Representative Public ID F59G1.1A NCBI
Target Description F59G1.1A /REP_DB=WormBase Gene ID /WP=CE07316 /TR=Q21054 /GB=AAK31528.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062780(10), NM_171006(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062780 NCBI Caenorhabditis elegans F59G1.1b (F59G1.1) mRNA, complete cds. 10/11 None
NM_171006 NCBI Caenorhabditis elegans F59G1.1c (F59G1.1) mRNA, complete cds. 9/11 None
F59G1.1b.3 ENSEMBL cdna:known chromosome:CEL140:II:5911285:5916864:1 gene:F59G1.1 10/11 None
F59G1.1b.2 ENSEMBL cdna:known chromosome:CEL140:II:5911287:5916864:1 gene:F59G1.1 10/11 None
F59G1.1b.1 ENSEMBL cdna:known chromosome:CEL140:II:5912520:5916864:1 gene:F59G1.1 10/11 None
F59G1.1c ENSEMBL cdna:known chromosome:CEL140:II:5912567:5916861:1 gene:F59G1.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182196 8/11 Cross Hyb Matching Probes None
NM_062781 8/11 Cross Hyb Matching Probes None
SNAP00000033452 8/11 Cross Hyb Matching Probes None
GENEFINDER00000033457 8/11 Cross Hyb Matching Probes None
F59G1.1d.2 8/11 Cross Hyb Matching Probes None
F59G1.1a 8/11 Cross Hyb Matching Probes None
F59G1.1d.3 8/11 Cross Hyb Matching Probes None
F59G1.1d.1 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174001 4 2 NM_062780 186200_s_at (10)
NM_171006 186200_s_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5914185-5916765(+) 100.0 100.0
Public Domain and Genome References
Ensembl F59G1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL32225 Hypothetical protein F59G1.1b [Caenorhabditis elegans] ref|NP_495181.2| F59G1.1b [Caenorhabditis elegans] 0.0
blast AAL32224 Hypothetical protein F59G1.1a [Caenorhabditis elegans] ref|NP_495182.2| F59G1.1a [Caenorhabditis elegans] 0.0
blast AAO38632 Hypothetical protein F59G1.1d [Caenorhabditis elegans] ref|NP_871996.1| F59G1.1d [Caenorhabditis elegans] 0.0
blast AAM15582 Hypothetical protein F59G1.1c [Caenorhabditis elegans] ref|NP_741005.1| F59G1.1c [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495181.2 3 86-108,382-404,424-446
NP_741005.1 1 85-107
F59G1.1b.3 3 86-108,382-404,424-446
F59G1.1b.2 3 86-108,382-404,424-446
F59G1.1b.1 3 86-108,382-404,424-446
F59G1.1c 1 85-107
Sequence
Target Sequence 
>C. ELEGANS:186200_S_AT
caaatctgcaatatcatctcacccagctctccagaactcatcatcagtatcggtttcgtc
atttctcgatagaatttgcagatgggtcaagttaaggattgccatgttgccacacattct
tctcgttgagccattgcaggattgcttcccgtctggtttaatcatggcattcagtttgaa
tcatttggtaggattgaatataatgccaatattgatacttcatactatctactggttcag
tatggattactcgctaatgaacagtatgcagaatggcaaattgagcttctctccacttca
atttatgctcatttggcttttgcgtgactcaccgctcctttcgtctttatcaaagctctt
ttacaaccaacaattcaatggcgaaacaatgtttttcatttggcatggggtggacagata
cttccaccaaaatgttgattgtttcatttattcattttatttccaaatttcactaacccc
aaattcatcattcttgtctgtgattctgtttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAATCTGCAATATCATCTCACCCA 665 193 954 Antisense
GCTCTCCAGAACTCATCATCAGTAT 633 299 979 Antisense
TCAGTATCGGTTTCGTCATTTCTCG 38 623 997 Antisense
AAGGATTGCCATGTTGCCACACATT 177 161 1047 Antisense
CACATTCTTCTCGTTGAGCCATTGC 469 195 1066 Antisense
TGAGCCATTGCAGGATTGCTTCCCG 526 569 1080 Antisense
GCTTCCCGTCTGGTTTAATCATGGC 70 307 1097 Antisense
ATGGCAAATTGAGCTTCTCTCCACT 418 53 1226 Antisense
ATGCTCATTTGGCTTTTGCGTGACT 352 43 1258 Antisense
TTCACTAACCCCAAATTCATCATTC 82 687 1422 Antisense
ATTCTTGTCTGTGATTCTGTTTCTC 667 11 1443 Antisense
Sequence Source Affymetrix Proprietary Database