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[186198_at]

Description EEED8.13 /REP_DB=WormBase Gene ID /WP=CE02588 /TR=Q19068 /GB=AAC46773.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 14.9
(1)
A 		9.4
(-2.2)
A 		8.1
(-3)
A 		18.3
(3)
A 		10
B 8.5
(-3)
A 		29
(3)
A 		15
(-1.1)
A 		8.6
(-3)
A 		21
C 6.9
(-3)
A 		56.3
(3)
A 		8.7
(-2.8)
A 		9.2
(-2.7)
A 		49
avr 10.1
(-3) 		31.6
(3) 		10.6
(-2.9) 		12
(-2.5) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 17.4
(-2.1)
A 		8.5
(-3)
A 		67.5
(3)
A 		8.7
(-2.9)
A 		15.1
(-2.3)
A 		8.2
(-3)
A 		59
B 11.4
(-2.8)
A 		9.5
(-3)
A 		13.6
(-2.6)
A 		43
(0.3)
A 		17.6
(-2.2)
A 		70
(3)
A 		61
C 21.9
(-1.6)
A 		32.3
(-0.5)
A 		11.3
(-2.8)
A 		65.3
(3)
A 		11.2
(-2.8)
A 		9
(-3)
A 		56
avr 16.9
(-2.4) 		16.8
(-2.5) 		30.8
(1) 		39
(3) 		14.6
(-3) 		29.1
(0.6) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 5.4
(3)
A 		2
(-3)
A 		2.1
(-2.8)
A 		2.7
(-1.8)
A 		3
B 2.7
(-2)
A 		7.2
(3)
A 		3.5
(-1.1)
A 		1.8
(-3)
A 		5
C 2.3
(-2.7)
A 		16.2
(3)
A 		3
(-2.4)
A 		1.6
(-3)
A 		15
avr 3.5
(-1.6) 		8.5
(3) 		2.9
(-2.2) 		2
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 3.2
(-2.4)
A 		3
(-2.5)
A 		14.7
(3)
A 		2.2
(-2.9)
A 		4.5
(-1.8)
A 		2
(-3)
A 		13
B 4
(-2.8)
A 		3.2
(-3)
A 		3.3
(-3)
A 		11.4
(-0.9)
A 		7.2
(-2)
A 		26.1
(3)
A 		23
C 8.1
(0.1)
A 		9.9
(1.1)
A 		2.9
(-3)
A 		13.1
(3)
A 		3.6
(-2.6)
A 		3
(-2.9)
A 		10
avr 5.1
(-3) 		5.4
(-2.7) 		7
(-0.8) 		8.9
(1.3) 		5.1
(-3) 		10.4
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186198_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4288
Sequence Type Exemplar sequence
Representative Public ID EEED8.13 NCBI
Target Description EEED8.13 /REP_DB=WormBase Gene ID /WP=CE02588 /TR=Q19068 /GB=AAC46773.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062622(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062622 NCBI Caenorhabditis elegans EEED8.13 (EEED8.13) mRNA, complete cds. 11/11 None
SNAP00000023174 ENSEMBL cdna:SNAP chromosome:CEL140:II:5411605:5412138:-1 11/11 None
EEED8.13 ENSEMBL cdna:known chromosome:CEL140:II:5411605:5412138:-1 gene:EEED8.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000023182 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5411602-5412136(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl EEED8.13
Entrez Gene 184045 Entrez gene
SwissProt Q19068 EMBL-EBI
WormBase CE02588 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46773 Hypothetical protein EEED8.13 [Caenorhabditis elegans] ref|NP_495023.1| EEED8.13 [Caenorhabditis elegans] 2.0E-92
Sequence
Target Sequence 
>C. ELEGANS:186198_AT
ttcggtggccactcaactggctgaaacttcaaagctctcatggacaaaggctcaattctc
aacttaacctgatccactctcgaaaatggatcgatttcgatgagcagattgttggaactt
ggaaactggcttcttcggaaaattgtccgaatttcatcgaatggtttggcattgaaaaga
agaagagcaattatggatattataacgacttgactcaggctaaactcaatgagaatcttg
ttttcaagatgaattacaataatatcgttggcatcccgaaattattcccacacatgtctg
agaaaacagtcagggaaaaccggcatatcaagacgacagacgaccgttccctgaaactca
caattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGGTGGCCACTCAACTGGCTGAA 199 695 23 Antisense
GGCTGAAACTTCAAAGCTCTCATGG 142 541 41 Antisense
GCTCTCATGGACAAAGGCTCAATTC 523 299 56 Antisense
GGCTCAATTCTCAACTTAACCTGAT 116 539 71 Antisense
TTAACCTGATCCACTCTCGAAAATG 138 681 86 Antisense
GGAACTTGGAAACTGGCTTCTTCGG 502 525 136 Antisense
AACGACTTGACTCAGGCTAAACTCA 558 121 226 Antisense
GTTGGCATCCCGAAATTATTCCCAC 214 435 289 Antisense
AATTATTCCCACACATGTCTGAGAA 292 175 302 Antisense
ATCAAGACGACAGACGACCGTTCCC 261 25 349 Antisense
ACCGTTCCCTGAAACTCACAATTGA 301 87 365 Antisense
Sequence Source Affymetrix Proprietary Database