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[186196_s_at]

Description Y47D3A.14 /REP_DB=WormBase Gene ID /WP=CE22043 /TR=Q9NAH8 /GB=CAB55073.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 28      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 51.9
(-1)
A 		68.1
(-0.3)
A 		5
(-3)
A 		144.6
(3)
P 		140
B 77.3
(1.5)
A 		90.3
(3)
A 		39.5
(-3)
A 		61.9
(-0.4)
A 		51
C 65.3
(-0.7)
A 		89.1
(1.2)
A 		37.7
(-3)
A 		110.8
(3)
P 		73
avr 64.8
(-0.1) 		82.5
(1.2) 		27.4
(-3) 		105.8
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 34.9
(-2.1)
A 		25.9
(-3)
A 		54.8
(-0.1)
A 		59.9
(0.4)
A 		86.7
(3)
P 		75.6
(1.9)
A 		61
B 58.2
(-0.6)
A 		48.1
(-1.6)
A 		48.7
(-1.5)
A 		34
(-3)
A 		76.8
(1.3)
A 		93.3
(3)
P 		59
C 11.1
(-3)
A 		39.7
(-0.7)
A 		31.7
(-1.3)
A 		36.8
(-0.9)
A 		39.5
(-0.7)
A 		85.6
(3)
P 		75
avr 34.7
(-3) 		37.9
(-2.6) 		45.1
(-1.8) 		43.6
(-1.9) 		67.7
(1) 		84.8
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 18.9
(2.3)
A 		14.8
(1.1)
A 		1.3
(-3)
A 		21.2
(3)
P 		20
B 24.7
(3)
A 		22.3
(2.1)
A 		9.2
(-3)
A 		13.2
(-1.5)
A 		16
C 21.6
(1.1)
A 		25.6
(3)
A 		13.1
(-3)
A 		18.7
(-0.3)
P 		13
avr 21.7
(3) 		20.9
(2.7) 		7.9
(-3) 		17.7
(1.3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 6.4
(-3)
A 		9.2
(-2.2)
A 		11.9
(-1.3)
A 		15.2
(-0.3)
A 		26.2
(3)
P 		18.4
(0.6)
A 		20
B 20.3
(-0.4)
A 		16
(-1.4)
A 		11.8
(-2.3)
A 		9
(-3)
A 		31.2
(2.2)
A 		34.8
(3)
P 		26
C 4.1
(-3)
A 		12.1
(-1)
A 		8.1
(-2)
A 		7.4
(-2.2)
A 		12.8
(-0.9)
A 		28.7
(3)
P 		25
avr 10.3
(-3) 		12.4
(-2.3) 		10.6
(-2.9) 		10.5
(-2.9) 		23.4
(1.6) 		27.3
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186196_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6664
Sequence Type Exemplar sequence
Representative Public ID Y47D3A.14 NCBI
Target Description Y47D3A.14 /REP_DB=WormBase Gene ID /WP=CE22043 /TR=Q9NAH8 /GB=CAB55073.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171231(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171231 NCBI Caenorhabditis elegans fatty acid ELOngation family member (elo-8) (elo-8) mRNA, complete cds. 11/11 None
GENEFINDER00000007284 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11228203:11236732:-1 11/11 None
Y47D3A.30 ENSEMBL cdna:known chromosome:CEL140:III:11228203:11233257:-1 gene:Y47D3A.30 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007212 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11228531-11236728(-) 92.75 95.05
Public Domain and Genome References
Gene Title
Gene Symbol elo-8
Ensembl Y47D3A.30
Entrez Gene 259739 Entrez gene
SwissProt Q8T3A8 EMBL-EBI
WormBase CE30360 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD27612 Hypothetical protein Y47D3A.30 [Caenorhabditis elegans] ref|NP_741275.1| fatty acid ELOngation family member (elo-8) [Caenorhabditis elegans] 0.0
blast CAB55073 Hypothetical protein Y47D3A.14 [Caenorhabditis elegans] ref|NP_499445.2| Y47D3A.14 [Caenorhabditis elegans] 1.0E-164
blast CAE68949 Hypothetical protein CBG14929 [Caenorhabditis briggsae] 1.0E-122
blast CAE68949 Hypothetical protein CBG14929 [Caenorhabditis briggsae] 1.0E-121
blast CAE67638 Hypothetical protein CBG13197 [Caenorhabditis briggsae] 6.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR002125 EMBL-EBI Cytidine/deoxycytidylate deaminase, zinc-binding region 1.3E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741275.1 9 5-27,34-56,157-179,192-214,229-251,264-281,291-313,320-342,355-377
Y47D3A.30 9 5-27,34-56,157-179,192-214,229-251,264-281,291-313,320-342,355-377
GENEFINDER00000007284 9 308-330,337-359,460-482,495-517,532-554,567-584,594-616,623-645,658-680
Sequence
Target Sequence 
>C. ELEGANS:186196_S_AT
tgcaaattgggctcggtgtcctgatcattctattcgccgaattctattggtcacgagttc
aagcgttccgtaagaagaatatgaagagtggaggaggaggtaccagtaatagtgacagtt
cggagcaagaatcggagaaagttctgaagaagctgaaagccagaagaccgtcggatgaaa
ctgtcattccagttccccactatatcgtgtgtcctctttttccaagccacgtggcaattc
caaaagtgtcctggcatgcgtatgtaccaagacatagatatctgccaaatttgggagata
gagaaaaaaaactgaaaattaatttttgccaactttatattaggttaccaaataagtccc
gtgtcaaaagtcataactatttagaaattattaaacttcgaatcttagctccaagcggca
cgcgtctttcaactgtaagacacacacacacccttctcttccaaatttggcagtacaaaa
tcaatagtttttgtcaaattaaaaaaatccaattttttgtggtgtgcggcgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAAATTGGGCTCGGTGTCCTGAT 286 577 2003 Antisense
TGTCCTGATCATTCTATTCGCCGAA 436 557 2019 Antisense
TATTCGCCGAATTCTATTGGTCACG 16 665 2033 Antisense
GGTCACGAGTTCAAGCGTTCCGTAA 386 501 2051 Antisense
GCTGAAAGCCAGAAGACCGTCGGAT 12 295 2154 Antisense
CACTATATCGTGTGTCCTCTTTTTC 502 193 2200 Antisense
GTGTCCTGGCATGCGTATGTACCAA 450 487 2248 Antisense
AACTTCGAATCTTAGCTCCAAGCGG 132 139 2396 Antisense
GGCACGCGTCTTTCAACTGTAAGAC 453 535 2419 Antisense
CAACTGTAAGACACACACACACCCT 52 187 2432 Antisense
CAATTTTTTGTGGTGTGCGGCGAAT 56 181 2512 Antisense
Sequence Source Affymetrix Proprietary Database