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[186195_at]

Description Y45F10B.6 /REP_DB=WormBase Gene ID /WP=CE18405 /TR=O62472 /GB=CAA16358.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 21      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 79
(3)
A 		37.4
(-3)
A 		43.8
(-2.1)
A 		76.8
(2.7)
A 		42
B 66.8
(0.8)
A 		76.5
(3)
A 		49.6
(-3)
A 		69.2
(1.4)
A 		27
C 73.4
(-0.4)
A 		49.4
(-2.9)
A 		48.7
(-3)
A 		106
(3)
P 		57
avr 73.1
(1.2) 		54.4
(-1.9) 		47.4
(-3) 		84
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 80.6
(3)
A 		75.7
(2.5)
A 		72
(2.1)
A 		56.4
(0.5)
A 		22
(-3)
A 		29.8
(-2.2)
A 		59
B 55.2
(-1)
A 		58.6
(-0.3)
A 		74.8
(3)
A 		45.1
(-3)
A 		66
(1.2)
A 		48.7
(-2.3)
A 		30
C 36.5
(-2.8)
A 		72.3
(2.5)
A 		75.9
(3)
A 		73.6
(2.7)
A 		35.1
(-3)
A 		39.3
(-2.4)
A 		41
avr 57.4
(0.1) 		68.9
(2.1) 		74.2
(3) 		58.4
(0.3) 		41
(-2.7) 		39.3
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 28.7
(3)
A 		8.1
(-3)
A 		11.5
(-2)
A 		11.2
(-2.1)
A 		21
B 21.3
(3)
A 		18.9
(1.5)
A 		11.5
(-3)
A 		14.7
(-1)
A 		10
C 24.3
(3)
A 		14.2
(-3)
A 		17
(-1.3)
A 		17.9
(-0.8)
P 		10
avr 24.8
(3) 		13.7
(-2.8) 		13.3
(-3) 		14.6
(-2.3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 14.9
(-0.5)
A 		26.9
(3)
A 		15.7
(-0.3)
A 		14.3
(-0.7)
A 		6.6
(-3)
A 		7.3
(-2.8)
A 		20
B 19.2
(-0.1)
A 		19.5
(0.1)
A 		18.2
(-0.5)
A 		11.9
(-3)
A 		26.8
(3)
A 		18.2
(-0.5)
A 		15
C 13.5
(-1.8)
A 		22.1
(3)
A 		19.3
(1.4)
A 		14.8
(-1.1)
A 		11.4
(-3)
A 		13.2
(-2)
A 		11
avr 15.9
(-1.2) 		22.8
(3) 		17.7
(-0.1) 		13.7
(-2.5) 		14.9
(-1.8) 		12.9
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186195_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9312
Sequence Type Exemplar sequence
Representative Public ID Y45F10B.6 NCBI
Target Description Y45F10B.6 /REP_DB=WormBase Gene ID /WP=CE18405 /TR=O62472 /GB=CAA16358.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070217(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070217 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-11) (sru-11) mRNA, complete cds. 11/11 None
GENEFINDER00000007872 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13580283:13587257:1 11/11 None
Y45F10B.6 ENSEMBL cdna:known chromosome:CEL140:IV:13584915:13587257:1 gene:Y45F10B.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007857 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13584920-13587263(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-11
Ensembl Y45F10B.6
Entrez Gene 189917 Entrez gene
SwissProt O62472 EMBL-EBI
WormBase CE34613 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16355 Hypothetical protein Y45F10B.4 [Caenorhabditis elegans] ref|NP_502616.2| Serpentine Receptor, class U family member (sru-16) [Caenorhabditis elegans] 0.0
blast CAB05613 Hypothetical protein T04A11.10 [Caenorhabditis elegans] ref|NP_502394.2| Serpentine Receptor, class U family member (sru-17) [Caenorhabditis elegans] 1.0E-178
blast CAA16358 Hypothetical protein Y45F10B.6 [Caenorhabditis elegans] ref|NP_502618.2| Serpentine Receptor, class U family member (sru-11) [Caenorhabditis elegans] 1.0E-173
blast CAA16358 Hypothetical protein Y45F10B.6 [Caenorhabditis elegans] ref|NP_502618.2| Serpentine Receptor, class U family member (sru-11) [Caenorhabditis elegans] 1.0E-151
blast CAA98129 Hypothetical protein F53B2.4 [Caenorhabditis elegans] ref|NP_502397.2| Serpentine Receptor, class U family member (sru-13) [Caenorhabditis elegans] 1.0E-117
blast CAA16356 Hypothetical protein Y45F10B.5 [Caenorhabditis elegans] ref|NP_502617.2| Serpentine Receptor, class U family member (sru-12) [Caenorhabditis elegans] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 9.1E-64
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.0E-87
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.5E-89
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 9.1E-64
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502618.2 6 23-45,66-83,112-134,155-177,203-225,256-278
Y45F10B.6 6 23-45,66-83,112-134,155-177,203-225,256-278
GENEFINDER00000007872 18 24-46,67-89,113-135,156-178,205-227,254-276,407-429,450-472,496-518,539-561,566-585,592-611,634-656,668-690,713-735,756-778,804-826,857-879
Sequence
Target Sequence 
>C. ELEGANS:186195_AT
gaaatcgttgtcagctcggatatcaaaatatgcgatcccattcatttacgtctacccatt
catattttcattttccctagcaccggctctcggtttttgtagacaacttttggggccata
tcagtttggtgcaatttatatttggttcagtggaaattggatggaggtagtttactttac
aaaaattgtattaaatatagagctaaataattttcagattaaaattgtagttggattcgt
cttgaacatgatcttctggcttatcctgtgcactctattgaacttattcctctatagaaa
actgaagaaaatgagcaatcacggaaaaagcgcgacactccaaagagctgaatattccct
taccttgacaactttctcaatgcttttgtcgtacatcacgaacttggcgtgtgccctaat
gttcataatcttcccatcaatgttggtgtacttcatcgctctccgaccttttggaaatga
ttgtgaaacagtttttgtgccatgggttttctacctaactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCGTTGTCAGCTCGGATATCA 40 363 447 Antisense
TATGCGATCCCATTCATTTACGTCT 261 655 475 Antisense
TTCATTTACGTCTACCCATTCATAT 522 689 487 Antisense
CTAGCACCGGCTCTCGGTTTTTGTA 289 1 523 Antisense
ACATGATCTTCTGGCTTATCCTGTG 472 107 692 Antisense
TATCCTGTGCACTCTATTGAACTTA 635 657 708 Antisense
AAAGCGCGACACTCCAAAGAGCTGA 641 123 773 Antisense
AGAGCTGAATATTCCCTTACCTTGA 416 69 790 Antisense
GAACTTGGCGTGTGCCCTAATGTTC 287 349 846 Antisense
CAATGTTGGTGTACTTCATCGCTCT 318 183 884 Antisense
TGCCATGGGTTTTCTACCTAACTCA 436 583 944 Antisense
Sequence Source Affymetrix Proprietary Database