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[186194_s_at]

Description Y38E10A.4 /REP_DB=WormBase Gene ID /WP=CE21584 /TR=Q9NAK6 /GB=CAB54395.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 90      6grp_total > 63      4grp_total > 32      6grp_highest_sub > 03      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 105.1
(-3)
P 		135.5
(-1.4)
P 		171.4
(0.4)
P 		220.7
(3)
P 		116
B 104
(-3)
P 		139.7
(-1)
P 		196.1
(2.1)
P 		213.3
(3)
P 		109
C 99.6
(-3)
P 		119.9
(-1.9)
P 		213.2
(3)
P 		166.6
(0.5)
P 		114
avr 102.9
(-3) 		131.7
(-1.2) 		193.6
(2.6) 		200.2
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 107.1
(-3)
P 		196
(-0.3)
P 		305
(3)
P 		252.3
(1.4)
P 		138.5
(-2)
P 		190.9
(-0.5)
P 		198
B 85.8
(-3)
P 		145.5
(-0.7)
P 		239.6
(3)
P 		141.7
(-0.8)
P 		182.2
(0.8)
P 		124.8
(-1.5)
P 		154
C 108.4
(-3)
P 		115.3
(-2.8)
P 		293.4
(3)
P 		169.4
(-1)
P 		176.5
(-0.8)
P 		132.1
(-2.2)
P 		185
avr 100.4
(-3) 		152.3
(-1.3) 		279.3
(3) 		187.8
(-0.1) 		165.7
(-0.8) 		149.3
(-1.4) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 38.3
(0.5)
P 		29.4
(-3)
P 		44.8
(3)
P 		32.3
(-1.9)
P 		15
B 33.2
(-3)
P 		34.5
(-2.4)
P 		45.4
(3)
P 		45.5
(3)
P 		12
C 33
(-2.4)
P 		34.5
(-2.2)
P 		74.3
(3)
P 		28.1
(-3)
P 		46
avr 34.8
(-2.5) 		32.8
(-3) 		54.8
(3) 		35.3
(-2.3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 19.7
(-3)
P 		69.7
(3)
P 		66.4
(2.6)
P 		64
(2.3)
P 		41.8
(-0.3)
P 		46.5
(0.2)
P 		50
B 29.9
(-3)
P 		48.4
(-0.5)
P 		58.2
(0.9)
P 		37.5
(-2)
P 		74
(3)
P 		46.5
(-0.7)
P 		44
C 40.2
(-2.1)
P 		35.2
(-2.8)
P 		74.7
(3)
P 		34.1
(-3)
P 		57.1
(0.4)
P 		44.2
(-1.5)
P 		41
avr 29.9
(-3) 		51.1
(0.5) 		66.4
(3) 		45.2
(-0.5) 		57.6
(1.6) 		45.7
(-0.4) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186194_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2926
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.4 NCBI
Target Description Y38E10A.4 /REP_DB=WormBase Gene ID /WP=CE21584 /TR=Q9NAK6 /GB=CAB54395.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064286(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064286 NCBI Caenorhabditis elegans C-type LECtin family member (clec-8) (clec-8) mRNA, complete cds. 11/11 A 
SNAP00000017427 ENSEMBL cdna:SNAP chromosome:CEL140:II:12575610:12577623:-1 11/11 None
GENEFINDER00000017469 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12575214:12577623:-1 11/11 None
Y38E10A.4 ENSEMBL cdna:known chromosome:CEL140:II:12575214:12577623:-1 gene:Y38E10A.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12575210-12577620(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-8
Ensembl Y38E10A.4
Entrez Gene 174893 Entrez gene
SwissProt Q9NAK6 EMBL-EBI
WormBase CE38641 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54395 Hypothetical protein Y38E10A.4 [Caenorhabditis elegans] ref|NP_496687.2| C-type LECtin family member (clec-8) [Caenorhabditis elegans] 0.0
blast T26654 hypothetical protein Y38E10A.d - Caenorhabditis elegans 0.0
blast CAE65367 Hypothetical protein CBG10312 [Caenorhabditis briggsae] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.9E-6
Pfam IPR000859 EMBL-EBI CUB 9.4E-24
Pfam IPR000859 EMBL-EBI CUB 2.4E-19
Sequence
Target Sequence 
>C. ELEGANS:186194_S_AT
cataccctggctactacgacaataacatgtactgtagctatctactatctacaacaggag
cctataacatccttctgaagttcaccgatttctctacgaatctgaatttggattatgtga
cggtgtacgatggggagacgactagcagtccgatgcttggatcgttcagcggattcaacg
aaactccgatcaatctagtgtcgactgggaacacgatgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATACCCTGGCTACTACGACAATAA 193 215 965 Antisense
ATAACATGTACTGTAGCTATCTACT 326 25 986 Antisense
ATCTACTATCTACAACAGGAGCCTA 482 29 1004 Antisense
GGAGCCTATAACATCCTTCTGAAGT 114 521 1021 Antisense
TGAAGTTCACCGATTTCTCTACGAA 250 573 1040 Antisense
GACGGTGTACGATGGGGAGACGACT 77 377 1083 Antisense
GACGACTAGCAGTCCGATGCTTGGA 421 379 1101 Antisense
GATGCTTGGATCGTTCAGCGGATTC 314 413 1116 Antisense
CAGCGGATTCAACGAAACTCCGATC 18 203 1131 Antisense
AACTCCGATCAATCTAGTGTCGACT 293 141 1146 Antisense
AGTGTCGACTGGGAACACGATGCTG 693 57 1161 Antisense
Sequence Source Affymetrix Proprietary Database