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[186193_at]

Description Y38E10A.4 /REP_DB=WormBase Gene ID /WP=CE21584 /TR=Q9NAK6 /GB=CAB54395.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 08      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 54.9
(-0.9)
A 		41.4
(-2.9)
A 		40.8
(-3)
A 		82
(3)
A 		41
B 27.1
(-3)
A 		31.6
(-2.6)
A 		89
(3)
A 		75.9
(1.7)
A 		62
C 19.6
(-3)
A 		24.2
(-2.8)
A 		55.3
(-1.1)
A 		134.8
(3)
A 		115
avr 33.9
(-2.9) 		32.4
(-3) 		61.7
(-0.3) 		97.6
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 62.4
(-1)
A 		58.3
(-1.6)
A 		87.9
(3)
A 		87.8
(3)
A 		83.5
(2.3)
A 		49.3
(-3)
A 		39
B 25.7
(-3)
A 		83.4
(1.8)
A 		87
(2.2)
A 		97.1
(3)
A 		32.2
(-2.5)
A 		43.7
(-1.5)
A 		71
C 9.2
(-3)
A 		21.6
(-2.4)
A 		70.8
(-0.3)
A 		144.1
(3)
A 		59.7
(-0.8)
A 		10.5
(-2.9)
A 		135
avr 32.4
(-3) 		54.4
(-1.3) 		81.9
(0.8) 		109.7
(3) 		58.5
(-1) 		34.5
(-2.8) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 20
(3)
A 		9
(-3)
A 		10.7
(-2.1)
A 		12
(-1.4)
A 		11
B 8.7
(-2.6)
A 		7.8
(-3)
A 		20.6
(3)
A 		16.2
(0.9)
A 		13
C 6.5
(-3)
A 		7
(-2.8)
A 		19.3
(1.7)
A 		22.7
(3)
A 		16
avr 11.7
(-0.5) 		7.9
(-3) 		16.9
(2.9) 		17
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 11.5
(-3)
A 		20.7
(1)
A 		19.1
(0.3)
A 		22.3
(1.7)
A 		25.2
(3)
A 		12
(-2.8)
A 		14
B 8.9
(-3)
A 		27.7
(3)
A 		21.1
(0.9)
A 		25.7
(2.4)
A 		13.1
(-1.7)
A 		16.3
(-0.6)
A 		19
C 3.4
(-3)
A 		6.6
(-2.3)
A 		18
(0.4)
A 		29
(3)
A 		19.3
(0.7)
A 		3.5
(-3)
A 		26
avr 7.9
(-3) 		18.3
(0.5) 		19.4
(0.9) 		25.7
(3) 		19.2
(0.8) 		10.6
(-2.1) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186193_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2926
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.4 NCBI
Target Description Y38E10A.4 /REP_DB=WormBase Gene ID /WP=CE21584 /TR=Q9NAK6 /GB=CAB54395.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064286
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000017469 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12575214:12577623:-1 11/11 None
Y38E10A.4 ENSEMBL cdna:known chromosome:CEL140:II:12575214:12577623:-1 gene:Y38E10A.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064286 8/11 Cross Hyb Matching Probes A 
SNAP00000017427 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12575210-12577620(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y38E10A.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T26654 hypothetical protein Y38E10A.d - Caenorhabditis elegans 0.0
blast CAB54395 Hypothetical protein Y38E10A.4 [Caenorhabditis elegans] ref|NP_496687.2| C-type LECtin family member (clec-8) [Caenorhabditis elegans] 0.0
blast CAE65367 Hypothetical protein CBG10312 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.9E-6
Pfam IPR000859 EMBL-EBI CUB 2.4E-19
Sequence
Target Sequence 
>C. ELEGANS:186193_AT
tcttgccatgtctaccggaactggtagtatggtccccaccggttcctggtacccagttga
ttgtaaagcaagtaatagcttcctgtgcaagcggcctgcaggaacatcctgtccttgggt
ggaaccggagaccccgccaactcctgttattccatcaatgtgcaatagctctatgatcat
ggcacctgggaccatctcctcaccggcataccctggctactacgacaataacatgtactg
tagctatctactatctacaacaggagcctataacatccttctgaagttcaccgatttctc
tacgaatctgaatttggattatgtgacggtgtacgatggggagacgactagcagtccgat
gcttggatcgttcagcggattcaacgaaactccgatcaatctagtgtcgactgggaacac
gatgctgaagggtcataaaattattatgaccataaaaattataatatgtacaatcaatat
tccggtgtacggaaaagacatgaagttggcctataaaccaagttggtccatgtaccaagt
aggcctatgtatcaaacccttccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTGCCATGTCTACCGGAACTGGT 388 617 759 Antisense
CCGGTTCCTGGTACCCAGTTGATTG 479 259 797 Antisense
TAATAGCTTCCTGTGCAAGCGGCCT 415 635 831 Antisense
CAAGCGGCCTGCAGGAACATCCTGT 567 185 846 Antisense
TCCTGTCCTTGGGTGGAACCGGAGA 313 269 865 Antisense
CAACTCCTGTTATTCCATCAATGTG 274 189 896 Antisense
ATTCCATCAATGTGCAATAGCTCTA 506 7 907 Antisense
ATAGCTCTATGATCATGGCACCTGG 229 23 923 Antisense
GGGAACACGATGCTGAAGGGTCATA 342 493 1171 Antisense
GGTCCATGTACCAAGTAGGCCTATG 333 501 1283 Antisense
TAGGCCTATGTATCAAACCCTTCCC 434 649 1298 Antisense
Sequence Source Affymetrix Proprietary Database