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[186191_at]

Description F18F11.2 /REP_DB=WormBase Gene ID /WP=CE17685 /TR=P91260 /GB=AAB42285.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 2.9
(-2.7)
A 		25.2
(3)
A 		1.8
(-3)
A 		5
(-2.2)
A 		23
B 6.7
(-1.8)
A 		15.2
(1.8)
A 		18
(3)
A 		3.9
(-3)
A 		14
C 1.7
(-3)
A 		25.5
(2.2)
A 		8.2
(-1.6)
A 		29
(3)
A 		27
avr 3.8
(-3) 		22
(3) 		9.3
(-1.2) 		12.6
(-0.1) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 36.9
(3)
A 		2.3
(-3)
A 		2.4
(-3)
A 		2.4
(-3)
A 		18.9
(-0.1)
A 		4.2
(-2.7)
A 		35
B 4.8
(3)
A 		4.5
(2.5)
A 		3.3
(0.5)
A 		4.1
(1.8)
A 		2.3
(-1.2)
A 		1.2
(-3)
A 		4
C 23.9
(0.1)
A 		22.4
(-0.1)
A 		1.7
(-3)
A 		44.6
(3)
A 		5.3
(-2.5)
A 		2.3
(-2.9)
A 		43
avr 21.9
(3) 		9.7
(-0.8) 		2.5
(-3) 		17
(1.5) 		8.8
(-1.1) 		2.6
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.1
(-2.3)
A 		5.5
(3)
A 		0.5
(-3)
A 		0.7
(-2.8)
A 		5
B 2.1
(-0.7)
A 		3.8
(2.3)
A 		4.2
(3)
A 		0.8
(-3)
A 		3
C 0.6
(-3)
A 		7.3
(3)
A 		2.9
(-0.9)
A 		4.9
(0.9)
A 		7
avr 1.3
(-3) 		5.5
(3) 		2.5
(-1.3) 		2.1
(-1.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 6.8
(3)
A 		0.8
(-2.7)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		5.7
(2)
A 		1
(-2.5)
A 		6
B 1.7
(3)
A 		1.5
(2.1)
A 		0.8
(-1.2)
A 		1.1
(0.2)
A 		0.9
(-0.7)
A 		0.4
(-3)
A 		1
C 8.9
(2.9)
A 		6.8
(1.5)
A 		0.4
(-3)
A 		9
(3)
A 		1.7
(-2.1)
A 		0.8
(-2.7)
A 		9
avr 5.8
(3) 		3
(-0.2) 		0.6
(-3) 		3.6
(0.5) 		2.8
(-0.5) 		0.7
(-2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186191_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10711
Sequence Type Exemplar sequence
Representative Public ID F18F11.2 NCBI
Target Description F18F11.2 /REP_DB=WormBase Gene ID /WP=CE17685 /TR=P91260 /GB=AAB42285.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067508(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067508 NCBI Caenorhabditis elegans F18F11.2 (F18F11.2) mRNA, complete cds. 11/11 None
F18F11.2 ENSEMBL cdna:known chromosome:CEL140:IV:347473:349075:-1 gene:F18F11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:347472-349075(-) 96.99 100.0
Public Domain and Genome References
Gene Title
Ensembl F18F11.2
Entrez Gene 184651 Entrez gene
SwissProt P91260 EMBL-EBI
WormBase CE17685 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_499909 F18F11.2 [Caenorhabditis elegans] gb|AAB42285.1| Hypothetical protein F18F11.2 [Caenorhabditis elegans] 1.0E-63
blast T33757 hypothetical protein Y66H1B.1 - Caenorhabditis elegans 6.0E-15
blast AAF39872 Hypothetical protein H09I01.1 [Caenorhabditis elegans] ref|NP_501384.1| H09I01.1 [Caenorhabditis elegans] 9.0E-10
Sequence
Target Sequence 
>C. ELEGANS:186191_AT
ggcctaaacattcgaaattcctcaccaacagctgtgcactgtccaagacttgcgatgcaa
ctttttctgcgttcagcacttttaattccacttactatgacgcttctcagcgctgctctc
atggacaatttacaggtggaatttcggaacttcacctttaatttgcccagatcaaactat
gataatttaacaaattatgagaaattctggcgagcatttttgggtaacttttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCTAAACATTCGAAATTCCTCAC 537 543 121 Antisense
TCACCAACAGCTGTGCACTGTCCAA 639 625 142 Antisense
GTGCACTGTCCAAGACTTGCGATGC 414 481 154 Antisense
CGATGCAACTTTTTCTGCGTTCAGC 418 249 173 Antisense
GCGTTCAGCACTTTTAATTCCACTT 222 291 189 Antisense
AATTCCACTTACTATGACGCTTCTC 135 179 204 Antisense
TACTATGACGCTTCTCAGCGCTGCT 282 643 213 Antisense
CGCTGCTCTCATGGACAATTTACAG 707 255 231 Antisense
TACAGGTGGAATTTCGGAACTTCAC 459 643 251 Antisense
GGAACTTCACCTTTAATTTGCCCAG 473 525 266 Antisense
GCGAGCATTTTTGGGTAACTTTTCT 421 287 330 Antisense
Sequence Source Affymetrix Proprietary Database