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[186190_at]

Description F49F1.11 /REP_DB=WormBase Gene ID /WP=CE17094 /TR=Q9GZD8 /GB=AAF99967.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 1.4
(-3)
A 		3.7
(-2.4)
A 		2
(-2.8)
A 		22.9
(3)
A 		22
B 1.7
(-2.9)
A 		48.4
(3)
A 		1.3
(-3)
A 		15
(-1.3)
A 		47
C 19.9
(-0.6)
A 		2.3
(-3)
A 		2.1
(-3)
A 		47.5
(3)
A 		45
avr 7.7
(-1.7) 		18.1
(0.7) 		1.8
(-3) 		28.5
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.9
(-2.8)
A 		4.6
(-2.2)
A 		2.1
(-3)
A 		21.8
(3)
A 		4.9
(-2.1)
A 		3.8
(-2.5)
A 		20
B 7.7
(2.1)
A 		4.4
(-0.8)
A 		5.8
(0.4)
A 		8.7
(3)
A 		2.1
(-2.8)
A 		1.9
(-3)
A 		7
C 0.8
(-3)
A 		8.4
(-0.1)
A 		16.6
(3)
A 		5.9
(-1.1)
A 		1.9
(-2.6)
A 		4.1
(-1.7)
A 		16
avr 3.8
(-2.5) 		5.8
(-1.2) 		8.2
(0.4) 		12.1
(3) 		3
(-3) 		3.3
(-2.8) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.5
(-3)
A 		0.8
(-2.4)
A 		0.5
(-3)
A 		3.4
(3)
A 		3
B 0.6
(-2.8)
A 		12
(3)
A 		0.3
(-3)
A 		3.2
(-1.5)
A 		12
C 6.6
(1.8)
A 		0.7
(-3)
A 		0.7
(-3)
A 		8
(3)
A 		7
avr 2.6
(-0.1) 		4.5
(2.5) 		0.5
(-3) 		4.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.6
(-1.7)
A 		0.5
(-3)
A 		5.5
(3)
A 		1.5
(-1.8)
A 		0.9
(-2.5)
A 		5
B 2.7
(3)
A 		1.5
(-0.6)
A 		1.4
(-0.9)
A 		2.3
(1.8)
A 		0.8
(-2.7)
A 		0.7
(-3)
A 		2
C 0.3
(-3)
A 		2.6
(0.5)
A 		4.2
(3)
A 		1.2
(-1.6)
A 		0.6
(-2.5)
A 		1.4
(-1.3)
A 		4
avr 1.2
(-2.4) 		1.9
(-0.3) 		2
(0) 		3
(3) 		1
(-3) 		1
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186190_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10673
Sequence Type Exemplar sequence
Representative Public ID F49F1.11 NCBI
Target Description F49F1.11 /REP_DB=WormBase Gene ID /WP=CE17094 /TR=Q9GZD8 /GB=AAF99967.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068091(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068091 NCBI Caenorhabditis elegans F49F1.11 (F49F1.11) mRNA, complete cds. 11/11 None
GENEFINDER00000034599 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4135546:4143012:-1 10/11 None
F49F1.11 ENSEMBL cdna:known chromosome:CEL140:IV:4139678:4141400:-1 gene:F49F1.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034594 5/11 Cross Hyb Matching Probes None
SNAP00000034595 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4139683-4141406(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49F1.11
Entrez Gene 186067 Entrez gene
SwissProt Q9GZD8 EMBL-EBI
WormBase CE17094 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF99967 Hypothetical protein F49F1.11 [Caenorhabditis elegans] ref|NP_500492.1| F49F1.11 [Caenorhabditis elegans] 1.0E-142
blast AAF99966 Hypothetical protein F49F1.10 [Caenorhabditis elegans] ref|NP_500491.1| F49F1.10 [Caenorhabditis elegans] 7.0E-92
blast CAB04389 Hypothetical protein F46A8.3 [Caenorhabditis elegans] ref|NP_492885.1| F46A8.3 [Caenorhabditis elegans] 3.0E-84
blast AAF99967 Hypothetical protein F49F1.11 [Caenorhabditis elegans] ref|NP_500492.1| F49F1.11 [Caenorhabditis elegans] 5.0E-81
blast AAF99965 Hypothetical protein F49F1.9 [Caenorhabditis elegans] ref|NP_500490.1| F49F1.9 [Caenorhabditis elegans] 9.0E-81
blast CAB63394 Hypothetical protein F46A8.8 [Caenorhabditis elegans] emb|CAB63201.1| Hypothetical protein F46A8.8 [Caenorhabditis elegans] ref|NP_492881.1| F46A8.8 [Caenorhabditis elegans] 3.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034599 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:186190_AT
gcgaatttatggtacacctggagcaggaagatggaccatcaacctggccaagtcaaaagt
ttgggtgtttcatttcgcgtcagaacctaccaaggggcttgtagccagaacccgacatac
gaatggagcgtgggaagtcggagagacatatggaggaaacccattccgagctaataccta
ctttaatgttactatggtcaatcagccaacgcatatcgagattcatgtcaatggtgcatt
cttcgtaaatttcaaccatcgagttccaaatccatccagagactatcagggtatcgattt
ccaatttgttgatatctcgaaagttgtcagaaaccgatttttaaatggagcgtggcaagt
cgaagagaaatggggtggaaacccatttccagttagtactcccttcaatgtgactttgat
caaccagccatcgcatattgagattcatgtcaatggtgtattcttcgtaaacttcaatca
tcgaactcctaatccatcaagagattatcaaggtctcgatttccagttcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAATTTATGGTACACCTGGAGCA 71 289 357 Antisense
GACCATCAACCTGGCCAAGTCAAAA 105 383 390 Antisense
GGAAACCCATTCCGAGCTAATACCT 280 527 511 Antisense
GCATTCTTCGTAAATTTCAACCATC 403 307 592 Antisense
CAACCATCGAGTTCCAAATCCATCC 331 187 609 Antisense
GACTATCAGGGTATCGATTTCCAAT 291 371 637 Antisense
TACTCCCTTCAATGTGACTTTGATC 245 645 753 Antisense
TTTGATCAACCAGCCATCGCATATT 515 667 771 Antisense
GTATTCTTCGTAAACTTCAATCATC 412 453 814 Antisense
TTCAATCATCGAACTCCTAATCCAT 172 685 829 Antisense
TCAAGGTCTCGATTTCCAGTTCGTT 180 623 864 Antisense
Sequence Source Affymetrix Proprietary Database