[Home] | [Total List]

[186189_s_at]

Description F54D10.5 /REP_DB=WormBase Gene ID /WP=CE19455 /TR=Q9TZ88 /GB=AAC68785.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 56.3
(-3)
A 		65.8
(-2.6)
A 		96.9
(-1.1)
A 		183.3
(3)
A 		127
B 75.5
(-1)
A 		57.1
(-1.9)
A 		33.2
(-3)
A 		162.5
(3)
A 		129
C 68.9
(-3)
A 		92.4
(-1.8)
A 		73.5
(-2.8)
A 		182.9
(3)
A 		114
avr 66.9
(-3) 		71.8
(-2.7) 		67.9
(-2.9) 		176.2
(3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 388
1 2 3 4 5 6 range
A 37.8
(-2.7)
A 		25.8
(-3)
A 		39
(-2.7)
A 		142.1
(0.1)
A 		249.2
(2.9)
P 		252.3
(3)
P 		227
B 73.8
(-2.4)
A 		41.6
(-3)
A 		77.5
(-2.3)
A 		110.3
(-1.6)
A 		182.7
(-0.2)
P 		343.4
(3)
P 		302
C 73.5
(-2.5)
A 		44.5
(-3)
A 		110.5
(-1.9)
A 		52.6
(-2.9)
A 		165.7
(-1)
P 		414.2
(3)
P 		370
avr 61.7
(-2.5) 		37.3
(-3) 		75.7
(-2.2) 		101.7
(-1.7) 		199.2
(0.2) 		336.6
(3) 		299
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 20.5
(-0)
A 		14.3
(-3)
A 		25.3
(2.3)
A 		26.8
(3)
A 		13
B 24.1
(0.7)
A 		14.1
(-1.6)
A 		7.7
(-3)
A 		34.6
(3)
A 		27
C 22.8
(-3)
A 		26.6
(-0.1)
A 		25.6
(-0.9)
A 		30.8
(3)
A 		8
avr 22.5
(-1) 		18.3
(-3) 		19.5
(-2.4) 		30.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 7
(-3)
A 		9.2
(-2.8)
A 		8.5
(-2.9)
A 		36
(-0.4)
A 		75.2
(3)
P 		61.4
(1.8)
P 		68
B 25.7
(-2.4)
A 		13.8
(-3)
A 		18.8
(-2.7)
A 		29.2
(-2.2)
A 		74.2
(0.2)
P 		128.1
(3)
P 		114
C 27.2
(-2.2)
A 		13.6
(-2.9)
A 		28.1
(-2.2)
A 		10.6
(-3)
A 		53.6
(-1)
P 		138.7
(3)
P 		128
avr 20
(-2.5) 		12.2
(-3) 		18.5
(-2.6) 		25.3
(-2.2) 		67.7
(0.4) 		109.4
(3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186189_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4105
Sequence Type Exemplar sequence
Representative Public ID F54D10.5 NCBI
Target Description F54D10.5 /REP_DB=WormBase Gene ID /WP=CE19455 /TR=Q9TZ88 /GB=AAC68785.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062256(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062256 NCBI Caenorhabditis elegans F54D10.5 (F54D10.5) mRNA, complete cds. 11/11 None
SNAP00000030970 ENSEMBL cdna:SNAP chromosome:CEL140:II:3807305:3810454:-1 11/11 None
GENEFINDER00000030979 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3807305:3808163:-1 11/11 None
F54D10.5 ENSEMBL cdna:known chromosome:CEL140:II:3807089:3808163:-1 gene:F54D10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3807303-3808162(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54D10.5
Entrez Gene 173724 Entrez gene
SwissProt Q9TZ88 EMBL-EBI
WormBase CE19455 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68785 Hypothetical protein F54D10.5 [Caenorhabditis elegans] ref|NP_494657.1| F54D10.5 [Caenorhabditis elegans] 1.0E-132
Sequence
Target Sequence 
>C. ELEGANS:186189_S_AT
taatccgatgctcaacgttatccttggccgcacccaattaatggcaaatgatcagattcc
cgaagcgttcagacccgtgcacccaggtttatattctgcggcgcttgctcacgagcaaat
cattgacgtggtccgagcacgagtcgtcgaacagcgtgaaatgcagggaagttcggattc
tggagcactggaaaacgatttaaaccgaactttggaagtcactgaggatgccgaagtcat
ggaaaattgggtttcaatatacgaactgctgaatccttctgaacttcgaagccgaaaaaa
tggcctaactgagccagtcaacgatattctgaaagcctttttggagctgaacatggagaa
ctttgccgaaaaactgaccccgattttccacgatctcaagctggacaatcgtatcctgca
tatattgaaaacggctgagcaatgttgtcgccgtgaagatatcgacaagaggtttattcc
ggagcactgcacaattgcacgcaactttttgaaagcgactttctacactggacccaagcg
aaccgacaacttcatcttccagagcaacctgttttccacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCCGATGCTCAACGTTATCCTT 491 635 96 Antisense
GATCAGATTCCCGAAGCGTTCAGAC 330 421 145 Antisense
ACCCGTGCACCCAGGTTTATATTCT 26 89 168 Antisense
TTTATATTCTGCGGCGCTTGCTCAC 578 673 183 Antisense
TGACGTGGTCCGAGCACGAGTCGTC 104 571 219 Antisense
GAACTGCTGAATCCTTCTGAACTTC 227 349 358 Antisense
CCGATTTTCCACGATCTCAAGCTGG 611 263 475 Antisense
GGCTGAGCAATGTTGTCGCCGTGAA 631 539 528 Antisense
GGAGCACTGCACAATTGCACGCAAC 576 519 576 Antisense
CAAGCGAACCGACAACTTCATCTTC 153 187 630 Antisense
CTTCCAGAGCAACCTGTTTTCCACG 319 217 651 Antisense
Sequence Source Affymetrix Proprietary Database