[Home] | [Total List]

[186188_at]

Description T08H10.4 /REP_DB=WormBase Gene ID /WP=CE07477 /TR=Q22351 /GB=AAA97991.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 48      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 19.5
(-0.9)
A 		3.6
(-3)
A 		48.4
(3)
A 		5.8
(-2.7)
A 		45
B 4.1
(2.7)
A 		4.2
(3)
A 		2
(-3)
A 		2.9
(-0.5)
A 		2
C 1.9
(-3)
A 		4.9
(-0.4)
A 		1.9
(-3)
A 		8.7
(3)
A 		7
avr 8.5
(-1) 		4.2
(-3) 		17.4
(3) 		5.8
(-2.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 2
(-3)
A 		3.7
(-2.4)
A 		5
(-1.9)
A 		2.6
(-2.8)
A 		17.8
(3)
A 		3.4
(-2.5)
A 		16
B 4.9
(-2.2)
A 		1.8
(-3)
A 		25.3
(3)
A 		5.7
(-2)
A 		2.3
(-2.8)
A 		1.7
(-3)
A 		24
C 2.8
(-2.4)
A 		4.3
(-0.9)
A 		2.2
(-3)
A 		5.2
(-0)
A 		8.3
(3)
A 		2.9
(-2.3)
A 		6
avr 3.2
(-2.6) 		3.3
(-2.6) 		10.8
(3) 		4.5
(-1.7) 		9.5
(2) 		2.7
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 7.1
(0.2)
A 		0.8
(-3)
A 		12.7
(3)
A 		0.8
(-3)
A 		12
B 1.3
(3)
A 		1
(0.8)
A 		0.5
(-3)
A 		0.6
(-2.3)
A 		1
C 0.6
(-3)
A 		1.4
(2.3)
A 		0.7
(-2.3)
A 		1.5
(3)
A 		1
avr 3
(0.3) 		1.1
(-2.8) 		4.6
(3) 		1
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.3
(-1.9)
A 		1.1
(-2.2)
A 		0.7
(-2.6)
A 		5.4
(3)
A 		0.8
(-2.5)
A 		5
B 1.7
(-1.8)
A 		0.6
(-3)
A 		6.2
(3)
A 		1.5
(-2)
A 		0.9
(-2.7)
A 		0.6
(-3)
A 		6
C 1
(-1.9)
A 		1.3
(-1)
A 		0.6
(-3)
A 		1.1
(-1.6)
A 		2.7
(3)
A 		1
(-1.9)
A 		2
avr 1
(-2.5) 		1.1
(-2.2) 		2.6
(1.9) 		1.1
(-2.2) 		3
(3) 		0.8
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186188_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15611
Sequence Type Exemplar sequence
Representative Public ID T08H10.4 NCBI
Target Description T08H10.4 /REP_DB=WormBase Gene ID /WP=CE07477 /TR=Q22351 /GB=AAA97991.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071829(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071829 NCBI Caenorhabditis elegans T08H10.4 (T08H10.4) mRNA, complete cds. 11/11 None
T08H10.4 ENSEMBL cdna:known chromosome:CEL140:V:4480246:4481360:-1 gene:T08H10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001968 7/11 Cross Hyb Matching Probes None
GENEFINDER00000001972 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4480245-4481360(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08H10.4
Entrez Gene 188308 Entrez gene
SwissProt Q22351 EMBL-EBI
WormBase CE07477 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97991 Hypothetical protein T08H10.4 [Caenorhabditis elegans] ref|NP_504230.1| T08H10.4 [Caenorhabditis elegans] 6.0E-84
blast AAA97989 Hypothetical protein T08H10.3 [Caenorhabditis elegans] ref|NP_504229.1| T08H10.3 [Caenorhabditis elegans] 8.0E-36
blast NP_500694 E03H12.7 [Caenorhabditis elegans] gb|AAC47982.1| Hypothetical protein E03H12.7 [Caenorhabditis elegans] 6.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 9.4E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504230.1 2 12-34,38-60
T08H10.4 2 12-34,38-60
Sequence
Target Sequence 
>C. ELEGANS:186188_AT
gaaacgagatgatctccaaggcctccgagggcttgcaatcggagcagttctggcctttca
cttctttccgaaaacatttccaaacggctatattggagtcgacatgttttttgtgctttc
cggttttcttatggcgatgattattagctcaaaacctatcacttggaattcagtctatca
attttattttcgtcgttcaaaacggattttacctctttttatttttggcaaaaacactta
ctcagatgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACGAGATGATCTCCAAGGCCTC 643 357 15 Antisense
TCCAAGGCCTCCGAGGGCTTGCAAT 511 587 29 Antisense
GAGGGCTTGCAATCGGAGCAGTTCT 357 401 41 Antisense
TGCAATCGGAGCAGTTCTGGCCTTT 111 577 48 Antisense
GCCTTTCACTTCTTTCCGAAAACAT 494 281 67 Antisense
GAAAACATTTCCAAACGGCTATATT 136 353 84 Antisense
ACGGCTATATTGGAGTCGACATGTT 638 95 98 Antisense
TTGTGCTTTCCGGTTTTCTTATGGC 74 707 125 Antisense
ATTAGCTCAAAACCTATCACTTGGA 425 11 157 Antisense
ATCACTTGGAATTCAGTCTATCAAT 648 27 172 Antisense
GGCAAAAACACTTACTCAGATGAGA 229 535 241 Antisense
Sequence Source Affymetrix Proprietary Database