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[186187_at]

Description F23H11.9 /REP_DB=WormBase Gene ID /WP=CE09617 /TR=O01916 /GB=AAC71137.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 0      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 66      6grp_total > 08      4grp_total > 52      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1344
1 2 3 4 range
A 1329.2
(0.3)
P 		1933.3
(3)
P 		1478.4
(1)
P 		589.8
(-3)
P 		1344
B 1725
(3)
P 		1473.5
(1.6)
P 		1590.5
(2.3)
P 		619.7
(-3)
P 		1105
C 1425
(3)
P 		1371.5
(2.6)
P 		1262.8
(1.8)
P 		596.9
(-3)
P 		828
avr 1493.1
(2.4) 		1592.8
(3) 		1443.9
(2.1) 		602.1
(-3) 		991

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 855
1 2 3 4 5 6 range
A 1962.8
(3)
P 		1301.4
(-2)
P 		1165.8
(-3)
P 		1464.8
(-0.7)
P 		1299.5
(-2)
P 		1420.2
(-1.1)
P 		797
B 1456.6
(2.4)
P 		1325.3
(0.4)
P 		1495.1
(3)
P 		1396.9
(1.5)
P 		1108.1
(-3)
P 		1195.4
(-1.6)
P 		387
C 1280.5
(-1.9)
P 		1218.4
(-3)
P 		1568.4
(3)
P 		1518.9
(2.2)
P 		1238.6
(-2.7)
P 		1253.5
(-2.4)
P 		350
avr 1566.6
(3) 		1281.7
(-1.9) 		1409.8
(0.3) 		1460.2
(1.2) 		1215.4
(-3) 		1289.7
(-1.7) 		351
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 464
1 2 3 4 range
A 484
(3)
P 		419.7
(2)
P 		386.5
(1.5)
P 		86.3
(-3)
P 		398
B 550.1
(3)
P 		363.9
(0.3)
P 		368.6
(0.4)
P 		132.1
(-3)
P 		418
C 471.7
(3)
P 		394.3
(1.7)
P 		440.1
(2.5)
P 		100.6
(-3)
P 		371
avr 501.9
(3) 		392.6
(1.3) 		398.4
(1.4) 		106.3
(-3) 		396

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 361.8
(0.1)
P 		462.8
(3)
P 		253.9
(-3)
P 		371.5
(0.4)
P 		392.1
(1)
P 		345.8
(-0.4)
P 		209
B 506.8
(3)
P 		441.1
(0.3)
P 		363.1
(-3)
P 		370
(-2.7)
P 		450.2
(0.6)
P 		445.8
(0.5)
P 		144
C 474.6
(3)
P 		371.8
(-0.6)
P 		399.2
(0.3)
P 		305.5
(-3)
P 		400.8
(0.4)
P 		419.6
(1)
P 		169
avr 447.7
(3) 		425.2
(1.8) 		338.7
(-3) 		349
(-2.4) 		414.4
(1.2) 		403.7
(0.6) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186187_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8166
Sequence Type Exemplar sequence
Representative Public ID F23H11.9 NCBI
Target Description F23H11.9 /REP_DB=WormBase Gene ID /WP=CE09617 /TR=O01916 /GB=AAC71137.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027376(11), NM_001027375(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027376 NCBI Caenorhabditis elegans F23H11.9b (F23H11.9) mRNA, complete cds. 11/11 None
NM_001027375 NCBI Caenorhabditis elegans F23H11.9a (F23H11.9) mRNA, complete cds. 11/11 None
GENEFINDER00000010307 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:907661:909854:-1 11/11 None
SNAP00000010295 ENSEMBL cdna:SNAP chromosome:CEL140:III:908396:909854:-1 11/11 None
F23H11.9b.1 ENSEMBL cdna:known chromosome:CEL140:III:908331:909902:-1 gene:F23H11.9 11/11 None
F23H11.9a ENSEMBL cdna:known chromosome:CEL140:III:908396:909854:-1 gene:F23H11.9 11/11 None
F23H11.9b.3 ENSEMBL cdna:known chromosome:CEL140:III:908396:909831:-1 gene:F23H11.9 11/11 None
F23H11.9b.2 ENSEMBL cdna:known chromosome:CEL140:III:908396:909889:-1 gene:F23H11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:908395-909854(-) 98.38 100.0
Public Domain and Genome References
Ensembl F23H11.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71137 Hypothetical protein F23H11.9a [Caenorhabditis elegans] ref|NP_001022546.1| F23H11.9a [Caenorhabditis elegans] sp|O01916|CT155_CAEEL Protein C20orf155 homolog 1.0E-135
blast AAC71137 Hypothetical protein F23H11.9a [Caenorhabditis elegans] ref|NP_001022546.1| F23H11.9a [Caenorhabditis elegans] sp|O01916|CT155_CAEEL Protein C20orf155 homolog 1.0E-130
blast AAV58872 Hypothetical protein F23H11.9b [Caenorhabditis elegans] ref|NP_001022547.1| F23H11.9b [Caenorhabditis elegans] 1.0E-120
blast AAC71137 Hypothetical protein F23H11.9a [Caenorhabditis elegans] ref|NP_001022546.1| F23H11.9a [Caenorhabditis elegans] sp|O01916|CT155_CAEEL Protein C20orf155 homolog 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR000462 EMBL-EBI CDP-alcohol phosphatidyltransferase 4.3E-26
Pfam IPR000462 EMBL-EBI CDP-alcohol phosphatidyltransferase 4.3E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022547.1 4 46-68,101-123,167-184,194-216
NP_001022546.1 4 70-92,125-147,191-208,218-240
F23H11.9b.1 4 46-68,101-123,167-184,194-216
F23H11.9a 4 70-92,125-147,191-208,218-240
F23H11.9b.3 4 46-68,101-123,167-184,194-216
F23H11.9b.2 4 46-68,101-123,167-184,194-216
GENEFINDER00000010307 4 70-92,125-147,191-209,219-241
SNAP00000010295 4 70-92,125-147,191-208,218-240
Sequence
Target Sequence 
>C. ELEGANS:186187_AT
aaagtggcgactatccctaatgcaatttgtacagcacgaatcgcggcgactccactcatc
ggatatcttgttgttcaacacaattttactcctgctttcgtgctttttacagtcgccgga
gcaacggacttgctagacggcttcatcgctcgcaacgtacccggtcaaaaatcactgctt
ggctccgtgcttgatcctgtcgctgataaacttctcatttcaacaatgttcatcacaatg
acttatgctgggctcattccactacccctcacgtctgttgtcattttgcgtgacatttgt
ctcattggaggtggtttttataaacggtatcaagtgatgagtccaccatattccctcagt
agattctttaatccacaagtatcatctatgcaagttgtaccaacaatgatgagcaagatc
aacacagtacttcaaataacacttgttgcactttcgctctcctctccagtttttgacttc
tccacaggtgccaatgatgtcatagttggtctcggctgtatcacaggattcaccacaatc
tactcgggactac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTGGCGACTATCCCTAATGCAA 101 121 166 Antisense
CGACTCCACTCATCGGATATCTTGT 496 251 212 Antisense
TCAACACAATTTTACTCCTGCTTTC 39 631 240 Antisense
TGCTTTCGTGCTTTTTACAGTCGCC 594 579 258 Antisense
GCAACGGACTTGCTAGACGGCTTCA 62 321 286 Antisense
CAAAAATCACTGCTTGGCTCCGTGC 401 191 331 Antisense
GTGCTTGATCCTGTCGCTGATAAAC 11 481 352 Antisense
AGTGATGAGTCCACCATATTCCCTC 30 61 498 Antisense
ATAACACTTGTTGCACTTTCGCTCT 422 25 601 Antisense
TTTTGACTTCTCCACAGGTGCCAAT 39 677 636 Antisense
TTCACCACAATCTACTCGGGACTAC 705 685 694 Antisense
Sequence Source Affymetrix Proprietary Database