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[186186_at]

Description T22F3.10 /REP_DB=WormBase Gene ID /WP=CE13978 /TR=Q94306 /GB=AAB18312.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 23      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 156.9
(3)
P 		20.2
(-3)
A 		53
(-1.6)
A 		105.7
(0.8)
A 		137
B 107
(1.9)
P 		86.5
(-0.5)
A 		64.3
(-3)
A 		116.6
(3)
A 		52
C 82.9
(-1.9)
M 		78.7
(-2.6)
A 		76.3
(-3)
A 		112.9
(3)
P 		37
avr 115.6
(3) 		61.8
(-3) 		64.5
(-2.7) 		111.7
(2.6) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 74.4
(0.3)
A 		92.6
(2)
M 		78.6
(0.7)
P 		39.1
(-3)
A 		103.4
(3)
A 		48.2
(-2.2)
A 		64
B 74.2
(-0.4)
A 		67.1
(-1.2)
A 		91.8
(1.7)
A 		102.3
(3)
M 		59.4
(-2.2)
M 		52.5
(-3)
A 		50
C 87.5
(0.1)
M 		99.6
(1)
A 		129.4
(3)
A 		127.9
(2.9)
M 		62.7
(-1.5)
A 		41.2
(-3)
A 		88
avr 78.7
(0.6) 		86.4
(1.5) 		99.9
(3) 		89.8
(1.8) 		75.2
(0.2) 		47.3
(-3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 57.1
(3)
P 		4.4
(-3)
A 		13.9
(-1.9)
A 		15.5
(-1.7)
A 		53
B 34.1
(3)
P 		21.4
(-1)
A 		14.9
(-3)
A 		24.8
(0.1)
A 		19
C 27.5
(3)
M 		22.6
(-0.5)
A 		26.6
(2.4)
A 		19
(-3)
P 		9
avr 39.6
(3) 		16.1
(-3) 		18.5
(-2.4) 		19.8
(-2.1) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 13.7
(-2)
A 		32.9
(3)
M 		17.1
(-1.1)
P 		9.9
(-3)
A 		31.2
(2.6)
A 		11.7
(-2.5)
A 		23
B 25.8
(2)
A 		22.3
(-0.8)
A 		22.3
(-0.8)
A 		27.1
(3)
M 		24.1
(0.6)
M 		19.6
(-3)
A 		8
C 32.4
(2.8)
M 		30.4
(2.2)
A 		32.9
(3)
A 		25.7
(0.7)
M 		20.3
(-1)
A 		13.8
(-3)
A 		19
avr 24
(1) 		28.5
(3) 		24.1
(1) 		20.9
(-0.4) 		25.2
(1.5) 		15
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186186_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15634
Sequence Type Exemplar sequence
Representative Public ID T22F3.10 NCBI
Target Description T22F3.10 /REP_DB=WormBase Gene ID /WP=CE13978 /TR=Q94306 /GB=AAB18312.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071613(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071613 NCBI Caenorhabditis elegans T22F3.10 (T22F3.10) mRNA, complete cds. 11/11 None
T22F3.10 ENSEMBL cdna:known chromosome:CEL140:V:3606633:3609719:-1 gene:T22F3.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3606632-3609719(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22F3.10
Entrez Gene 188752 Entrez gene
SwissProt Q94306 EMBL-EBI
WormBase CE35782 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB18312 Hypothetical protein T22F3.10 [Caenorhabditis elegans] ref|NP_504014.3| T22F3.10 [Caenorhabditis elegans] 0.0
blast CAE66802 Hypothetical protein CBG12164 [Caenorhabditis briggsae] 1.0E-174
blast AAD56301 Hypothetical protein T22F3.11a [Caenorhabditis elegans] ref|NP_504015.1| T22F3.11a [Caenorhabditis elegans] 1.0E-162
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504014.3 11 4-20,32-54,58-80,87-109,119-138,176-198,218-240,252-274,279-301,314-336,346-368
T22F3.10 11 4-20,32-54,58-80,87-109,119-138,176-198,218-240,252-274,279-301,314-336,346-368
Sequence
Target Sequence 
>C. ELEGANS:186186_AT
gaaaatcttgaccagcccggtgataatttgcgtctggatcaatgcattttttgaaatgtc
tgccgtgattatgttctcctcattcataagtgaaaagctaaaaataatgattttcaacac
gtttgccgtcggattttccggattcttttttgcgtgtatcggcttcattccagccgagca
caacatgttgtcactctccttcttcatcttgacaatgtgctgtattggagtcaattccgg
cggattttacaagtgtggggtgttgcattcgagacaattcgctcacgtcgtcattgccgc
aattcagtggatgaaatgcttggccttgttctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATCTTGACCAGCCCGGTGATA 270 353 534 Antisense
GCCCGGTGATAATTTGCGTCTGGAT 509 285 548 Antisense
AAATGTCTGCCGTGATTATGTTCTC 38 121 587 Antisense
GATTTTCAACACGTTTGCCGTCGGA 692 427 642 Antisense
GATTTTCCGGATTCTTTTTTGCGTG 564 427 665 Antisense
TTTTGCGTGTATCGGCTTCATTCCA 306 677 681 Antisense
TCATTCCAGCCGAGCACAACATGTT 310 619 698 Antisense
TCTCCTTCTTCATCTTGACAATGTG 193 611 728 Antisense
AAGTGTGGGGTGTTGCATTCGAGAC 68 159 784 Antisense
TCACGTCGTCATTGCCGCAATTCAG 209 627 816 Antisense
GATGAAATGCTTGGCCTTGTTCTCC 639 411 843 Antisense
Sequence Source Affymetrix Proprietary Database