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[186185_s_at]

Description Y47D3A.13 /REP_DB=WormBase Gene ID /WP=CE24329 /TR=Q9U2C8 /GB=CAB57893.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 46      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 13.8
(-0.9)
A 		5.7
(-3)
A 		7.1
(-2.6)
A 		28.4
(3)
A 		23
B 38.3
(3)
A 		30
(1.3)
A 		8.3
(-3)
A 		13.4
(-2)
A 		30
C 31.9
(1.7)
A 		23.5
(-0.4)
A 		37.2
(3)
A 		12.9
(-3)
A 		24
avr 28
(3) 		19.7
(-1.7) 		17.5
(-3) 		18.2
(-2.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1250
1 2 3 4 5 6 range
A 40
(-2.8)
A 		6.7
(-3)
A 		36.3
(-2.9)
A 		163.2
(-2.2)
P 		568.2
(-0.3)
P 		1253.6
(3)
P 		1247
B 4.1
(-3)
A 		13.5
(-2.9)
A 		9
(-3)
A 		97.8
(-2.3)
P 		682.6
(1.7)
P 		865.1
(3)
P 		861
C 43.1
(-2.8)
A 		23.8
(-2.9)
A 		12.7
(-3)
A 		101
(-2.4)
P 		700.9
(1.6)
P 		908.7
(3)
P 		896
avr 29.1
(-2.9) 		14.7
(-3) 		19.3
(-3) 		120.7
(-2.4) 		650.6
(0.8) 		1009.1
(3) 		994
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5
(3)
A 		1.2
(-3)
A 		1.9
(-1.9)
A 		4.2
(1.7)
A 		4
B 12.2
(3)
A 		7.4
(0.2)
A 		1.9
(-3)
A 		2.9
(-2.4)
A 		10
C 10.6
(1.7)
A 		6.7
(-0.5)
A 		13
(3)
A 		2.2
(-3)
A 		11
avr 9.3
(3) 		5.1
(-1.1) 		5.6
(-0.6) 		3.1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 7.4
(-2.9)
A 		2.4
(-3)
A 		7.9
(-2.9)
A 		41.4
(-2.2)
P 		171.5
(0.4)
P 		305.2
(3)
P 		303
B 1.4
(-3)
A 		4.5
(-2.9)
A 		2.2
(-3)
A 		25.9
(-2.5)
P 		277.3
(2.2)
P 		322.6
(3)
P 		321
C 16
(-2.7)
A 		7.3
(-2.9)
A 		3.2
(-3)
A 		20.3
(-2.7)
P 		226.8
(1.5)
P 		304.2
(3)
P 		301
avr 8.3
(-2.9) 		4.7
(-3) 		4.4
(-3) 		29.2
(-2.5) 		225.2
(1.3) 		310.7
(3) 		306
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186185_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6462
Sequence Type Exemplar sequence
Representative Public ID Y47D3A.13 NCBI
Target Description Y47D3A.13 /REP_DB=WormBase Gene ID /WP=CE24329 /TR=Q9U2C8 /GB=CAB57893.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067026(11), NM_067042(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067026 NCBI Caenorhabditis elegans W09D6.4 (W09D6.4) mRNA, complete cds. 11/11 None
NM_067042 NCBI Caenorhabditis elegans Y47D3A.13 (Y47D3A.13) mRNA, complete cds. 11/11 None
SNAP00000007210 ENSEMBL cdna:SNAP chromosome:CEL140:III:11218774:11226995:-1 11/11 None
GENEFINDER00000007276 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11223419:11227238:-1 11/11 None
SNAP00000027410 ENSEMBL cdna:SNAP chromosome:CEL140:III:11079669:11090387:1 11/11 None
GENEFINDER00000027412 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11079669:11081725:1 11/11 None
W09D6.4 ENSEMBL cdna:known chromosome:CEL140:III:11079669:11080250:1 gene:W09D6.4 11/11 None
Y47D3A.13 ENSEMBL cdna:known chromosome:CEL140:III:11223419:11223905:-1 gene:Y47D3A.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11079700-11080245(+) 91.0 97.08
chrIII:11223414-11223901(-) 93.92 100.0
Public Domain and Genome References
Gene Title

Ensembl W09D6.4
Y47D3A.13
Entrez Gene 176538 Entrez gene
176550 Entrez gene
SwissProt Q9XUJ5 EMBL-EBI
Q9U2C8 EMBL-EBI
WormBase CE19018 Wormbase
CE24329 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB57892 Hypothetical protein Y47D3A.12 [Caenorhabditis elegans] ref|NP_499444.1| T BoX family member (tbx-37) [Caenorhabditis elegans] sp|Q9U2C9|TBX37_CAEEL Putative T-box protein 1.0E-177
blast CAB57892 Hypothetical protein Y47D3A.12 [Caenorhabditis elegans] ref|NP_499444.1| T BoX family member (tbx-37) [Caenorhabditis elegans] sp|Q9U2C9|TBX37_CAEEL Putative T-box protein 1.0E-152
blast CAB03909 Hypothetical protein C24H11.3 [Caenorhabditis elegans] ref|NP_499526.1| C24H11.3 [Caenorhabditis elegans] sp|Q9XVD5|TBX38_CAEEL Putative T-box protein 1.0E-106
blast CAE67636 Hypothetical protein CBG13193 [Caenorhabditis briggsae] 5.0E-68
blast CAE67636 Hypothetical protein CBG13193 [Caenorhabditis briggsae] 6.0E-68
blast CAB04943 Hypothetical protein W09D6.4 [Caenorhabditis elegans] ref|NP_499427.1| W09D6.4 [Caenorhabditis elegans] 3.0E-65
blast CAB04943 Hypothetical protein W09D6.4 [Caenorhabditis elegans] ref|NP_499427.1| W09D6.4 [Caenorhabditis elegans] 1.0E-64
blast CAB04943 Hypothetical protein W09D6.4 [Caenorhabditis elegans] ref|NP_499427.1| W09D6.4 [Caenorhabditis elegans] 2.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR001699 EMBL-EBI Transcription factor, T-box 2.1E-60
Pfam IPR001699 EMBL-EBI Transcription factor, T-box 2.1E-60
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499427.1 1 4-26
W09D6.4 1 4-26
SNAP00000007210 1 328-347
GENEFINDER00000007276 1 367-386
GENEFINDER00000027412 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:186185_S_AT
atgttggtgcttcaattgtcaattgtcaattgtcaactagtgccaagtgaacgacacaat
cagaagatagctgaacagatcaatgattacaataatgatccacatatcatcaaggccgag
atttctgcaccggatgtcgttgtcaacaagtatacacttcaggataagaacatttctgcc
gctcttaagaaacatgttgcggaagcggcggcacactttgcaacaatgactgacgctgac
cgtgacgccgcagttgtccaactaccaaatgcaaatcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTGGTGCTTCAATTGTCAATTG 188 33 13 Antisense
GTCAATTGTCAACTAGTGCCAAGTG 281 463 37 Antisense
GATCCACATATCATCAAGGCCGAGA 689 415 109 Antisense
TCAAGGCCGAGATTTCTGCACCGGA 81 633 122 Antisense
ATTTCTGCACCGGATGTCGTTGTCA 370 17 133 Antisense
GCACCGGATGTCGTTGTCAACAAGT 75 315 139 Antisense
GTTGTCAACAAGTATACACTTCAGG 394 435 151 Antisense
ATTTCTGCCGCTCTTAAGAAACATG 568 13 184 Antisense
TTAAGAAACATGTTGCGGAAGCGGC 640 683 197 Antisense
CGCCGCAGTTGTCCAACTACCAAAT 174 255 258 Antisense
GTCCAACTACCAAATGCAAATCATA 39 477 268 Antisense
Sequence Source Affymetrix Proprietary Database