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[186184_at] 7TM chemoreceptor, srx family

Description E02C12.2 /REP_DB=WormBase Gene ID /WP=CE04311 /TR=Q19027 /GB=AAA83460.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 17      6grp_cgc > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 12.6
(-3)
A 		35.3
(-1.4)
A 		25.9
(-2.1)
A 		99.4
(3)
P 		87
B 25.2
(-3)
M 		25.5
(-3)
A 		51.8
(-0.9)
P 		100.7
(3)
P 		76
C 13.7
(-3)
A 		58
(-0.3)
A 		19.3
(-2.7)
A 		112
(3)
P 		98
avr 17.2
(-3) 		39.6
(-1.5) 		32.3
(-2) 		104
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 44.9
(3)
A 		39.1
(2.1)
P 		8.5
(-2.6)
A 		17.8
(-1.2)
A 		6.2
(-3)
A 		39.9
(2.2)
A 		39
B 17.5
(-0.9)
A 		42.7
(3)
P 		24.3
(0.1)
A 		15.6
(-1.2)
A 		4.3
(-3)
A 		16.4
(-1.1)
A 		38
C 4.2
(-2.9)
A 		36
(3)
P 		29.8
(1.9)
A 		18.7
(-0.2)
A 		3.5
(-3)
A 		19.3
(-0.1)
A 		33
avr 22.2
(0) 		39.3
(3) 		20.9
(-0.2) 		17.4
(-0.8) 		4.7
(-3) 		25.2
(0.6) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 4.6
(-3)
A 		7.7
(-1.1)
A 		6.8
(-1.7)
A 		14.5
(3)
P 		10
B 8
(-2.3)
M 		6.3
(-3)
A 		12
(-0.8)
P 		21.5
(3)
P 		15
C 4.5
(-3)
A 		16.7
(2.1)
A 		6.7
(-2.1)
A 		18.9
(3)
P 		14
avr 5.7
(-3) 		10.2
(-0.9) 		8.5
(-1.7) 		18.3
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 8.3
(0.2)
A 		13.9
(3)
P 		1.9
(-3)
A 		4.5
(-1.7)
A 		1.9
(-3)
A 		9.7
(0.9)
A 		12
B 6.1
(-0.9)
A 		14.2
(3)
P 		5.9
(-1)
A 		4.1
(-1.8)
A 		1.7
(-3)
A 		6.1
(-0.9)
A 		13
C 1.5
(-2.8)
A 		11
(3)
P 		7.6
(0.9)
A 		3.8
(-1.4)
A 		1.1
(-3)
A 		6.5
(0.3)
A 		10
avr 5.3
(-1.1) 		13
(3) 		5.1
(-1.2) 		4.1
(-1.7) 		1.6
(-3) 		7.4
(0.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186184_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11942
Sequence Type Exemplar sequence
Representative Public ID E02C12.2 NCBI
Target Description E02C12.2 /REP_DB=WormBase Gene ID /WP=CE04311 /TR=Q19027 /GB=AAA83460.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073022(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073022 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-46) (srx-46) mRNA, complete cds. 11/11 None
SNAP00000032001 ENSEMBL cdna:SNAP chromosome:CEL140:V:9355876:9357081:1 11/11 None
GENEFINDER00000032018 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9352571:9357081:1 11/11 None
E02C12.2 ENSEMBL cdna:known chromosome:CEL140:V:9355876:9357081:1 gene:E02C12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9355875-9357081(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-46
Ensembl E02C12.2
Entrez Gene 183984 Entrez gene
SwissProt Q19027 EMBL-EBI
WormBase CE04311 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83460 Serpentine receptor, class x protein 46 [Caenorhabditis elegans] ref|NP_505423.1| Serpentine Receptor, class X family member (srx-46) [Caenorhabditis elegans] 1.0E-166
blast AAA83460 Serpentine receptor, class x protein 46 [Caenorhabditis elegans] ref|NP_505423.1| Serpentine Receptor, class X family member (srx-46) [Caenorhabditis elegans] 1.0E-158
blast AAA83459 Serpentine receptor, class x protein 47 [Caenorhabditis elegans] ref|NP_505422.1| Serpentine Receptor, class X family member (srx-47) [Caenorhabditis elegans] 1.0E-141
blast CAE72161 Hypothetical protein CBG19261 [Caenorhabditis briggsae] 1.0E-119
blast CAE72161 Hypothetical protein CBG19261 [Caenorhabditis briggsae] 1.0E-115
blast AAA83459 Serpentine receptor, class x protein 47 [Caenorhabditis elegans] ref|NP_505422.1| Serpentine Receptor, class X family member (srx-47) [Caenorhabditis elegans] 3.0E-87
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505423.1 6 7-29,84-106,126-148,168-190,215-237,247-269
E02C12.2 6 7-29,84-106,126-148,168-190,215-237,247-269
SNAP00000032001 6 7-29,84-106,126-148,168-190,215-237,247-269
GENEFINDER00000032018 11 5-27,48-67,77-99,120-142,162-184,213-235,245-267,421-443,463-485,511-533,543-565
Sequence
Target Sequence 
>C. ELEGANS:186184_AT
tatactcgccccatgataatatctgtcaatatctacgcatttgcatcagttatcatattt
ttgctgagcggttgtaaatacagttggagcactgaaatgtggatgttcttgtaccatgtg
tcaaatcaatgcgtcagtttctcattttacgctattttctgtaaatacatcagcataatc
ttcataattgtgctaattgatgtatttgtgatttgtaaagcaagatttatgtacaagaaa
tcgaaaaatgatgcgaagagtaaacagatgaattcaaaagaaatctgtttcctcgtacaa
acctgtcttcaaggagttttgttcagtattgagctaatttgttatttcataatctcaccg
agagttgaagacacgtgggttcgctttttcatgacaacctttgcattctcaaccattcat
gcatgcgatggagccataagcattgcatgcaattcggactttcgatcttacttgcgtaga
tgttcaatgaagaagatcagtaatagaactgaatccgctctttatgcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATACTCGCCCCATGATAATATCTG 226 661 367 Antisense
CTGTCAATATCTACGCATTTGCATC 32 241 389 Antisense
GTGGATGTTCTTGTACCATGTGTCA 674 489 465 Antisense
GTCAGTTTCTCATTTTACGCTATTT 419 465 499 Antisense
TTTCCTCGTACAAACCTGTCTTCAA 678 669 654 Antisense
TGAAGACACGTGGGTTCGCTTTTTC 122 575 732 Antisense
TCGCTTTTTCATGACAACCTTTGCA 60 599 747 Antisense
AACCTTTGCATTCTCAACCATTCAT 326 147 762 Antisense
CATTGCATGCAATTCGGACTTTCGA 274 215 807 Antisense
GGACTTTCGATCTTACTTGCGTAGA 173 525 822 Antisense
GAACTGAATCCGCTCTTTATGCATC 186 349 872 Antisense
Sequence Source Affymetrix Proprietary Database