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[186183_at]

Description C16C4.13 /REP_DB=WormBase Gene ID /WP=CE08209 /TR=O16561 /GB=AAB93663.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 43      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 12.8
(-3)
A 		31.7
(2.9)
A 		31.9
(3)
P 		14
(-2.6)
A 		19
B 15.8
(-1.6)
A 		46.1
(3)
A 		6.6
(-3)
A 		11.3
(-2.3)
A 		40
C 31
(0.1)
A 		44.2
(3)
P 		27
(-0.8)
A 		17.2
(-3)
A 		27
avr 19.9
(-1.7) 		40.7
(3) 		21.8
(-1.3) 		14.2
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 53.7
(3)
A 		21.3
(-0.7)
A 		29.1
(0.2)
A 		46.1
(2.1)
A 		17
(-1.2)
P 		1.7
(-3)
A 		52
B 3.8
(-3)
A 		19.6
(0.4)
A 		28.2
(2.2)
A 		31.9
(3)
A 		8.6
(-2)
A 		29
(2.4)
A 		28
C 28.5
(2.9)
A 		17.8
(-1)
A 		14.6
(-2.1)
A 		28.8
(3)
A 		25.5
(1.8)
A 		12.2
(-3)
A 		17
avr 28.7
(1.1) 		19.6
(-1.5) 		24
(-0.3) 		35.6
(3) 		17
(-2.2) 		14.3
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.7
(-0.5)
A 		6.9
(1.6)
A 		8.3
(3)
P 		2.1
(-3)
A 		6
B 5
(-0.9)
A 		11.4
(3)
A 		1.5
(-3)
A 		2.4
(-2.5)
A 		10
C 10.3
(1.5)
A 		12.7
(3)
P 		9.4
(1)
A 		2.9
(-3)
A 		10
avr 6.7
(0.2) 		10.3
(3) 		6.4
(0) 		2.5
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 9.9
(2)
A 		7.6
(0.8)
A 		6.3
(0.1)
A 		11.7
(3)
A 		5.1
(-0.5)
P 		0.4
(-3)
A 		11
B 1.3
(-3)
A 		6.5
(0.3)
A 		6.8
(0.5)
A 		8.4
(1.5)
A 		3.5
(-1.6)
A 		10.8
(3)
A 		10
C 10.6
(3)
A 		5.4
(-1.5)
A 		3.7
(-3)
A 		5.8
(-1.2)
A 		8.2
(0.9)
A 		4.1
(-2.7)
A 		7
avr 7.3
(0.8) 		6.5
(-0.6) 		5.6
(-2.1) 		8.6
(3) 		5.6
(-2.1) 		5.1
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186183_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4770
Sequence Type Exemplar sequence
Representative Public ID C16C4.13 NCBI
Target Description C16C4.13 /REP_DB=WormBase Gene ID /WP=CE08209 /TR=O16561 /GB=AAB93663.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061710(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061710 NCBI Caenorhabditis elegans C16C4.13 (C16C4.13) mRNA, complete cds. 9/11 None
GENEFINDER00000026918 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1887211:1889173:-1 9/11 None
C16C4.13 ENSEMBL cdna:known chromosome:CEL140:II:1887211:1889173:-1 gene:C16C4.13 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026907 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1887209-1889172(-) 84.07 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C4.13
Entrez Gene 182667 Entrez gene
SwissProt O16561 EMBL-EBI
WormBase CE36789 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93663 Hypothetical protein C16C4.13 [Caenorhabditis elegans] ref|NP_494111.2| C16C4.13 [Caenorhabditis elegans] 0.0
blast AAB71076 Hypothetical protein ZK250.7 [Caenorhabditis elegans] ref|NP_494138.1| ZK250.7 [Caenorhabditis elegans] 0.0
blast AAB70956 Hypothetical protein C46F9.2 [Caenorhabditis elegans] ref|NP_494117.1| C46F9.2 [Caenorhabditis elegans] 1.0E-141
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 3.4E-44
Pfam IPR002083 EMBL-EBI MATH 1.5E-13
Pfam IPR002083 EMBL-EBI MATH 4.2E-33
Sequence
Target Sequence 
>C. ELEGANS:186183_AT
ggggtcgaaacatgcgatatttctttaaattttctcaaaagctcatatttttcaaaactt
tgacaggaaattataaaaatgttgaaaaatttggagtgttttattatgatattcggtcgt
ttgggattgttataaatgtaccatgtacgctgaaatcatttgatctatcccatactatca
agaacttgtcaagtattaaagaaggagggaacatatttacgggcattcaaactcggttta
acattccatggcggatgaaaatcgagaaacaaaatggatttctaggattatatcttcatc
gtgagaaaaaaattgaaattgattttcaattaaaattagtgtcgccaaacggaaaaagtt
tatcgattgaaagatgtagtggttatggctgggacatgttcctcagatgggatgtgttgg
aggaggattacatagtcaacgacaccatcgtattagaagctcgtgtctggattcggaaaa
tgactggagtggagggggatgttgagaagtttccgggatttgtgatcccagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGTCGAAACATGCGATATTTCTT 89 499 914 Antisense
GATATTCGGTCGTTTGGGATTGTTA 333 427 1021 Antisense
ATGTACCATGTACGCTGAAATCATT 624 45 1049 Antisense
TGAAATCATTTGATCTATCCCATAC 205 573 1064 Antisense
AGGAGGGAACATATTTACGGGCATT 596 55 1116 Antisense
TAGGATTATATCTTCATCGTGAGAA 434 653 1196 Antisense
GTAGTGGTTATGGCTGGGACATGTT 228 457 1289 Antisense
ACGACACCATCGTATTAGAAGCTCG 684 91 1352 Antisense
GTATTAGAAGCTCGTGTCTGGATTC 478 453 1363 Antisense
GGAGTGGAGGGGGATGTTGAGAAGT 377 515 1399 Antisense
GTTTCCGGGATTTGTGATCCCAGTG 440 449 1422 Antisense
Sequence Source Affymetrix Proprietary Database