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[186182_s_at]

Description R02E12.6 /REP_DB=WormBase Gene ID /WP=CE04783 /TR=Q21642 /GB=AAA96185.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 96      6grp_total > 48      4grp_total > 25      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3110
1 2 3 4 range
A 1600.3
(-3)
P 		3341.8
(3)
P 		3107.2
(2.2)
P 		3267.2
(2.7)
P 		1742
B 1567.5
(-3)
P 		3111.6
(0.3)
P 		3104.8
(0.3)
P 		4383
(3)
P 		2816
C 1718
(-3)
P 		3225.6
(0.1)
P 		2949.1
(-0.5)
P 		4677
(3)
P 		2959
avr 1628.6
(-3) 		3226.3
(0.9) 		3053.7
(0.4) 		4109.1
(3) 		2481

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1214
1 2 3 4 5 6 range
A 1491.7
(3)
P 		743.6
(-1.5)
P 		484.7
(-3)
P 		744.2
(-1.5)
P 		675.4
(-1.9)
P 		1326.7
(2)
P 		1007
B 1313.4
(2.3)
P 		663.8
(-1.5)
P 		409.4
(-3)
P 		609.3
(-1.8)
P 		864.9
(-0.3)
P 		1437.5
(3)
P 		1028
C 1096.8
(0.7)
P 		878.9
(-0.4)
P 		354.4
(-3)
P 		593.7
(-1.8)
P 		585.6
(-1.9)
P 		1568.8
(3)
P 		1214
avr 1300.6
(2.2) 		762.1
(-1) 		416.2
(-3) 		649.1
(-1.6) 		708.6
(-1.3) 		1444.3
(3) 		1028
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 550
1 2 3 4 range
A 582.7
(-1.1)
P 		725.4
(1.4)
P 		812.3
(3)
P 		478.3
(-3)
P 		334
B 499.8
(-3)
P 		768.5
(0.7)
P 		719.4
(0)
P 		934
(3)
P 		434
C 568.7
(-3)
P 		927.4
(1.7)
P 		1027.8
(3)
P 		788.6
(-0.1)
P 		459
avr 550.4
(-3) 		807.1
(2.1) 		853.2
(3) 		733.6
(0.6) 		303

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 446
1 2 3 4 5 6 range
A 275
(1.7)
P 		264.5
(1.4)
P 		105.6
(-3)
P 		188.8
(-0.7)
P 		203.8
(-0.3)
P 		323
(3)
P 		217
B 457
(1.9)
P 		221
(-1.3)
P 		99.4
(-3)
P 		161.4
(-2.1)
P 		351.4
(0.5)
P 		536.1
(3)
P 		437
C 406.5
(1.4)
P 		268.2
(-0.5)
P 		90.2
(-3)
P 		119.4
(-2.6)
P 		189.5
(-1.6)
P 		525.2
(3)
P 		435
avr 379.5
(1.6) 		251.2
(-0.5) 		98.4
(-3) 		156.5
(-2) 		248.2
(-0.5) 		461.4
(3) 		363
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186182_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18420
Sequence Type Exemplar sequence
Representative Public ID R02E12.6 NCBI
Target Description R02E12.6 /REP_DB=WormBase Gene ID /WP=CE04783 /TR=Q21642 /GB=AAA96185.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076289(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076289 NCBI Caenorhabditis elegans R02E12.6 (R02E12.6) mRNA, complete cds. 11/11 None
SNAP00000023241 ENSEMBL cdna:SNAP chromosome:CEL140:X:4008212:4008949:-1 10/11 None
GENEFINDER00000023251 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4008212:4008949:-1 10/11 None
R02E12.6.1 ENSEMBL cdna:known chromosome:CEL140:X:4007704:4008954:-1 gene:R02E12.6 10/11 None
R02E12.6.2 ENSEMBL cdna:known chromosome:CEL140:X:4008108:4010925:-1 gene:R02E12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4008212-4010951(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02E12.6
Entrez Gene 180684 Entrez gene
SwissProt Q21642 EMBL-EBI
WormBase CE30099 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96185 Hypothetical protein R02E12.6 [Caenorhabditis elegans] ref|NP_508690.2| R02E12.6 [Caenorhabditis elegans] 1.0E-96
blast CAE68513 Hypothetical protein CBG14327 [Caenorhabditis briggsae] 5.0E-82
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508690.2 4 46-65,70-89,110-132,142-164
R02E12.6.1 4 46-65,70-89,110-132,142-164
R02E12.6.2 4 46-65,70-89,110-132,142-164
SNAP00000023241 4 46-65,70-89,110-132,142-164
GENEFINDER00000023251 4 46-65,70-89,110-132,142-164
Sequence
Target Sequence 
>C. ELEGANS:186182_S_AT
ggccactcggttccgaaaccattagcgggggcgacttgtatgcatcaaatctacagcagt
gacgtcagctctatcacttcgaaaagctcgatagctaaagctgaaatcatcacaatggaa
gaggaacaacaaagacaatcgtgctgtacctggttccacagtctgaaagttcaaatctgg
attgcttggcttggagtgtcggcaggtgtgatggctggaactgtgttcgcaattcagtac
caaaattggatcgccgtcacgatgtgctttatctccagtggatttgcaactctggttctc
catcttcacctggcctataagaaaactcaaatggcaggatggtcagaaacaagactccga
tgccttgcggctgttggagccaccgtatcgttcctttcattcatcgcaatggtgttctgc
ctggtggttgctggaattgagcatcagacgttggataagcaaggtctcatgggagccaat
ctttggattgcggccgtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCACTCGGTTCCGAAACCATTAG 536 541 52 Antisense
ACGTCAGCTCTATCACTTCGAAAAG 150 93 113 Antisense
GTACCTGGTTCCACAGTCTGAAAGT 250 439 197 Antisense
GGATTGCTTGGCTTGGAGTGTCGGC 228 509 230 Antisense
GGTGTGATGGCTGGAACTGTGTTCG 655 499 256 Antisense
GATCGCCGTCACGATGTGCTTTATC 187 417 300 Antisense
TCCATCTTCACCTGGCCTATAAGAA 290 591 350 Antisense
GAAACAAGACTCCGATGCCTTGCGG 451 355 397 Antisense
TCGTTCCTTTCATTCATCGCAATGG 11 605 439 Antisense
TCGCAATGGTGTTCTGCCTGGTGGT 298 599 455 Antisense
GCCAATCTTTGGATTGCGGCCGTCT 599 277 526 Antisense
Sequence Source Affymetrix Proprietary Database