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[186180_at]

Description E02C12.6 /REP_DB=WormBase Gene ID /WP=CE04315 /TR=Q19030 /GB=AAA83463.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 59      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 65.4
(3)
P 		59.5
(1.3)
P 		64.2
(2.7)
P 		44.1
(-3)
A 		21
B 66.6
(0.4)
P 		66.2
(0.3)
A 		100.2
(3)
P 		23.8
(-3)
A 		76
C 73.9
(0.5)
A 		108.3
(3)
P 		90.3
(1.7)
P 		25.3
(-3)
A 		83
avr 68.6
(1.2) 		78
(2.2) 		84.9
(3) 		31.1
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 80.7
(2.4)
A 		58.3
(0.9)
M 		88.7
(3)
P 		56.9
(0.8)
P 		21
(-1.8)
A 		3.5
(-3)
A 		85
B 72.8
(3)
P 		64.9
(2.2)
P 		47
(0.4)
P 		13
(-3)
A 		33.3
(-1)
A 		22.6
(-2)
A 		60
C 81.2
(3)
P 		71.4
(2.2)
P 		63.7
(1.5)
P 		13.8
(-2.8)
A 		31
(-1.3)
A 		11.4
(-3)
A 		70
avr 78.2
(3) 		64.9
(1.8) 		66.5
(1.9) 		27.9
(-1.6) 		28.4
(-1.5) 		12.5
(-3) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 23.8
(3)
P 		12.9
(-0.8)
P 		16.8
(0.6)
P 		6.5
(-3)
A 		17
B 21.3
(2.4)
P 		16.3
(0.7)
A 		23.2
(3)
P 		5.1
(-3)
A 		18
C 24.5
(1.5)
A 		31.2
(2.9)
P 		31.5
(3)
P 		4.3
(-3)
A 		27
avr 23.2
(2.8) 		20.1
(1.8) 		23.8
(3) 		5.3
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 14.9
(1.2)
A 		20.7
(3)
M 		19.3
(2.6)
P 		14.4
(1.1)
P 		6.3
(-1.4)
A 		0.9
(-3)
A 		20
B 25.3
(3)
P 		21.6
(2)
P 		11.4
(-0.8)
P 		3.4
(-3)
A 		13.5
(-0.2)
A 		8.4
(-1.6)
A 		22
C 30.1
(3)
P 		21.8
(1.2)
P 		16.2
(-0.1)
P 		2.8
(-3)
A 		10
(-1.4)
A 		3.8
(-2.8)
A 		27
avr 23.4
(3) 		21.4
(2.4) 		15.6
(0.5) 		6.9
(-2.2) 		9.9
(-1.3) 		4.4
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186180_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11290
Sequence Type Exemplar sequence
Representative Public ID E02C12.6 NCBI
Target Description E02C12.6 /REP_DB=WormBase Gene ID /WP=CE04315 /TR=Q19030 /GB=AAA83463.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073025(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073025 NCBI Caenorhabditis elegans E02C12.6 (E02C12.6) mRNA, complete cds. 11/11 None
SNAP00000032005 ENSEMBL cdna:SNAP chromosome:CEL140:V:9372133:9373670:-1 11/11 None
GENEFINDER00000032015 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9372133:9373670:-1 11/11 None
E02C12.6 ENSEMBL cdna:known chromosome:CEL140:V:9372133:9373670:-1 gene:E02C12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9372132-9373670(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E02C12.6
Entrez Gene 183987 Entrez gene
SwissProt Q19030 EMBL-EBI
WormBase CE34289 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83463 Hypothetical protein E02C12.6 [Caenorhabditis elegans] ref|NP_505426.2| E02C12.6 [Caenorhabditis elegans] 0.0
blast AAA83463 Hypothetical protein E02C12.6 [Caenorhabditis elegans] ref|NP_505426.2| E02C12.6 [Caenorhabditis elegans] 1.0E-161
blast AAP68946 Hypothetical protein E02C12.8c [Caenorhabditis elegans] ref|NP_001023762.1| E02C12.8c [Caenorhabditis elegans] 1.0E-148
blast CAE72164 Hypothetical protein CBG19264 [Caenorhabditis briggsae] 1.0E-145
Protein Domains
Database ID Description E-Value
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 2.3E-7
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 2.3E-7
Sequence
Target Sequence 
>C. ELEGANS:186180_AT
gaagacttcttcactgatgcagagctgtctaagaaatttgaggctcttaaaactaaattt
gaaggtcaacaacacgcagaaaaagtgtcgaagcttattaaagtgtttgcacattataag
gcgttggtgaaaaaatataccaatatctcggaccttctaggtctgaaacccgtatttatt
catggagatttatggcaatcaaatattatgtttacactcgataatagtaaaaagttgaaa
ttagaggcgattattgattggcaaagtgtttcacgaattccacctgggatcgatttatcg
agaataatgttgggatgtttatctgcacaggaacgtcgtgaaagaggaacagaactattg
aaactctatcatgaaacctatgcgaaggtttttgggaaagaactatttacgttccaagag
cttcaagactcctataacctatatgctccaatgatggctatgctgattcttccgagttta
tcttctttcctcgattcagcacaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGACTTCTTCACTGATGCAGAGC 65 341 604 Antisense
TATACCAATATCTCGGACCTTCTAG 377 659 739 Antisense
GACCTTCTAGGTCTGAAACCCGTAT 199 313 754 Antisense
AAACCCGTATTTATTCATGGAGATT 177 125 769 Antisense
GTTTCACGAATTCCACCTGGGATCG 89 451 871 Antisense
GTTTATCTGCACAGGAACGTCGTGA 69 449 920 Antisense
TTCCAAGAGCTTCAAGACTCCTATA 295 699 1015 Antisense
GACTCCTATAACCTATATGCTCCAA 284 375 1030 Antisense
GCTATGCTGATTCTTCCGAGTTTAT 672 303 1060 Antisense
TTCCGAGTTTATCTTCTTTCCTCGA 126 697 1073 Antisense
TTCTTTCCTCGATTCAGCACAAATT 451 691 1086 Antisense
Sequence Source Affymetrix Proprietary Database