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[186179_at]

Description K05F1.10 /REP_DB=WormBase Gene ID /WP=CE02805 /TR=Q21248 /GB=AAA68717.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 51      4grp_highest_8_8 > 42      4grp_high_8_8 > 41      6grp_highest_nonorm > 52      6grp_total > 50      4grp_total > 54      6grp_highest_sub > 04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 875
1 2 3 4 range
A 998.8
(3)
P 		507.5
(-1.1)
P 		476.1
(-1.4)
P 		283.3
(-3)
P 		716
B 1120.7
(3)
P 		532.3
(-1.3)
P 		506.1
(-1.5)
P 		294.2
(-3)
P 		827
C 1026.6
(3)
P 		463.8
(-1.3)
P 		530.1
(-0.8)
P 		245.3
(-3)
P 		781
avr 1048.7
(3) 		501.2
(-1.2) 		504.1
(-1.2) 		274.3
(-3) 		774

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 644
1 2 3 4 5 6 range
A 593.6
(1)
P 		611.3
(1.2)
P 		729.4
(3)
P 		693.4
(2.5)
P 		509.8
(-0.3)
P 		324.9
(-3)
P 		405
B 440.8
(-1.6)
P 		614.5
(0.3)
P 		851.7
(3)
P 		674.1
(1)
P 		500.6
(-0.9)
P 		316.7
(-3)
P 		535
C 424.6
(-2.2)
P 		679.5
(0.3)
P 		596.1
(-0.5)
P 		961
(3)
P 		384.8
(-2.6)
P 		341.6
(-3)
P 		619
avr 486.3
(-0.9) 		635.1
(1.1) 		725.7
(2.3) 		776.2
(3) 		465.1
(-1.2) 		327.7
(-3) 		449
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 322
1 2 3 4 range
A 363.7
(3)
P 		110.2
(-1.7)
P 		124.5
(-1.5)
P 		41.5
(-3)
P 		322
B 357.4
(3)
P 		131.5
(-1.6)
P 		117.3
(-1.9)
P 		62.7
(-3)
P 		295
C 339.8
(3)
P 		133.3
(-1.2)
P 		184.8
(-0.1)
P 		41.4
(-3)
P 		298
avr 353.6
(3) 		125
(-1.5) 		142.2
(-1.2) 		48.5
(-3) 		305

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 109.4
(-1.7)
P 		217.4
(3)
P 		158.9
(0.5)
P 		175.9
(1.2)
P 		153.8
(0.2)
P 		79.1
(-3)
P 		138
B 153.4
(-0.6)
P 		204.6
(2.9)
P 		206.8
(3)
P 		178.5
(1.1)
P 		203.4
(2.8)
P 		118.1
(-3)
P 		89
C 157.4
(-0.2)
P 		207.3
(3)
P 		151.7
(-0.6)
P 		193.3
(2.1)
P 		124.5
(-2.3)
P 		114.3
(-3)
P 		93
avr 140.1
(-0.9) 		209.8
(3) 		172.5
(0.9) 		182.6
(1.5) 		160.6
(0.2) 		103.8
(-3) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186179_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4752
Sequence Type Exemplar sequence
Representative Public ID K05F1.10 NCBI
Target Description K05F1.10 /REP_DB=WormBase Gene ID /WP=CE02805 /TR=Q21248 /GB=AAA68717.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062747(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062747 NCBI Caenorhabditis elegans K05F1.10 (K05F1.10) mRNA, complete cds. 11/11 None
SNAP00000031249 ENSEMBL cdna:SNAP chromosome:CEL140:II:5803819:5805427:-1 11/11 None
GENEFINDER00000031252 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5803819:5805438:-1 11/11 None
K05F1.10 ENSEMBL cdna:known chromosome:CEL140:II:5804682:5805427:-1 gene:K05F1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5804678-5805424(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05F1.10
Entrez Gene 187030 Entrez gene
SwissProt Q21248 EMBL-EBI
WormBase CE02805 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68717 Hypothetical protein K05F1.10 [Caenorhabditis elegans] ref|NP_495148.1| K05F1.10 [Caenorhabditis elegans] 4.0E-84
blast AAA68717 Hypothetical protein K05F1.10 [Caenorhabditis elegans] ref|NP_495148.1| K05F1.10 [Caenorhabditis elegans] 6.0E-78
blast CAE59191 Hypothetical protein CBG02502 [Caenorhabditis briggsae] 7.0E-61
blast CAE59191 Hypothetical protein CBG02502 [Caenorhabditis briggsae] 1.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.7E-14
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.7E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000031252 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:186179_AT
atgcggctactgttgttgtgtgcgttgattgcagttgcatcggcttcactatttcatcac
catcacaacaaacggcgaattttaccaagacatcgcgtccgatcgccagcaactcgcact
cgaatccatgtgagatcagaacgaaaggctgaagaatgtcaaaaacacgagcatcacttg
atctgtggacccgagagacattgtgatcgcacatgcgagaacttgttcagcccacctcac
tgcctgaatcatcttcatcatgccaagtgctacttcccgagatgtgtatgcaacgatggt
tatgtaagaagcgaaaaggggatctgcattcggccatctcactgccccaacacttattac
gagccagcatcgatgctcatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGGCTACTGTTGTTGTGTGCGT 257 43 13 Antisense
GTTGATTGCAGTTGCATCGGCTTCA 165 439 36 Antisense
ATCGGCTTCACTATTTCATCACCAT 229 35 51 Antisense
TTTTACCAAGACATCGCGTCCGATC 526 671 92 Antisense
CAACTCGCACTCGAATCCATGTGAG 275 189 122 Antisense
CGAGCATCACTTGATCTGTGGACCC 517 249 180 Antisense
CATGCGAGAACTTGTTCAGCCCACC 43 211 224 Antisense
CTCACTGCCTGAATCATCTTCATCA 207 229 248 Antisense
TCTTCATCATGCCAAGTGCTACTTC 658 615 264 Antisense
GTGCTACTTCCCGAGATGTGTATGC 506 479 279 Antisense
TACGAGCCAGCATCGATGCTCATGG 393 647 370 Antisense
Sequence Source Affymetrix Proprietary Database