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[186177_s_at]

Description W06F12.2B /REP_DB=WormBase Gene ID /WP=CE24034 /TR=Q9U344 /GB=CAB54315.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 37      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 255
(3)
M 		247
(2.5)
A 		167.4
(-3)
A 		210.8
(-0)
A 		88
B 299.1
(3)
M 		239.2
(-0.7)
A 		201
(-3)
A 		206.9
(-2.6)
A 		98
C 348.3
(3)
M 		248.7
(-0.6)
A 		182.6
(-3)
A 		257
(-0.3)
A 		166
avr 300.8
(3) 		245
(0.1) 		183.7
(-3) 		224.9
(-0.9) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 285.2
(3)
A 		261.6
(1.8)
A 		166.2
(-2.8)
A 		162.4
(-3)
A 		173.1
(-2.5)
A 		225.1
(0.1)
A 		123
B 339.8
(3)
P 		258.7
(-0.1)
M 		204.7
(-2.2)
A 		184
(-3)
A 		221.2
(-1.6)
A 		226.4
(-1.4)
P 		156
C 425.7
(3)
P 		227.8
(-1.6)
A 		166.3
(-3)
A 		168.4
(-3)
A 		247.4
(-1.1)
A 		207.6
(-2)
A 		259
avr 350.2
(3) 		249.4
(-0.4) 		179.1
(-2.7) 		171.6
(-3) 		213.9
(-1.6) 		219.7
(-1.4) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 92.8
(3)
M 		53.6
(-0.8)
A 		43.8
(-1.7)
A 		30.9
(-3)
A 		62
B 95.4
(3)
M 		59.1
(-1.2)
A 		46.6
(-2.7)
A 		44.1
(-3)
A 		51
C 115.3
(3)
M 		71.5
(-0.7)
A 		63.6
(-1.3)
A 		43.3
(-3)
A 		72
avr 101.2
(3) 		61.4
(-0.9) 		51.3
(-1.8) 		39.4
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 52.6
(-1.3)
A 		93
(3)
A 		36.2
(-3)
A 		41.2
(-2.5)
A 		52.2
(-1.3)
A 		54.8
(-1)
A 		57
B 118.2
(3)
P 		86.1
(0.2)
M 		49.7
(-2.9)
A 		48.7
(-3)
A 		89.9
(0.6)
A 		84.4
(0.1)
P 		70
C 157.8
(3)
P 		69.5
(-1.3)
A 		42.3
(-2.6)
A 		33.9
(-3)
A 		80
(-0.8)
A 		69.5
(-1.3)
A 		124
avr 109.5
(3) 		82.9
(0.7) 		42.7
(-2.9) 		41.3
(-3) 		74
(-0.1) 		69.6
(-0.5) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186177_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7946
Sequence Type Exemplar sequence
Representative Public ID W06F12.2B NCBI
Target Description W06F12.2B /REP_DB=WormBase Gene ID /WP=CE24034 /TR=Q9U344 /GB=CAB54315.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067432(11), NM_067433(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067432 NCBI Caenorhabditis elegans W06F12.2b (W06F12.2) mRNA, complete cds. 11/11 None
NM_067433 NCBI Caenorhabditis elegans W06F12.2a (W06F12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000027469 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13726341:13729750:-1 11/11 None
SNAP00000027464 ENSEMBL cdna:SNAP chromosome:CEL140:III:13726415:13727443:-1 10/11 None
W06F12.2b ENSEMBL cdna:known chromosome:CEL140:III:13726169:13731195:-1 gene:W06F12.2 11/11 None
W06F12.2a ENSEMBL cdna:known chromosome:CEL140:III:13726341:13731167:-1 gene:W06F12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067431 5/11 Cross Hyb Matching Probes None
W06F12.2c 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176809 3 2 NM_067432 186177_s_at (11)
NM_067433 186177_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13726336-13731093(-) 93.73 100.0
Public Domain and Genome References
Ensembl W06F12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD18877 Hypothetical protein W06F12.2c [Caenorhabditis elegans] ref|NP_499832.1| W06F12.2c [Caenorhabditis elegans] 0.0
blast CAB54315 Hypothetical protein W06F12.2b [Caenorhabditis elegans] ref|NP_499833.1| W06F12.2b [Caenorhabditis elegans] 0.0
blast CAB54314 Hypothetical protein W06F12.2a [Caenorhabditis elegans] ref|NP_499834.1| W06F12.2a [Caenorhabditis elegans] 1.0E-177
blast CAD18877 Hypothetical protein W06F12.2c [Caenorhabditis elegans] ref|NP_499832.1| W06F12.2c [Caenorhabditis elegans] 1.0E-163
blast CAB54315 Hypothetical protein W06F12.2b [Caenorhabditis elegans] ref|NP_499833.1| W06F12.2b [Caenorhabditis elegans] 1.0E-163
blast CAE71381 Hypothetical protein CBG18288 [Caenorhabditis briggsae] 1.0E-161
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499833.1 4 15-37,82-104,114-136,143-165
NP_499834.1 4 15-34,76-98,108-130,137-159
W06F12.2b 4 15-37,82-104,114-136,143-165
W06F12.2a 4 15-34,76-98,108-130,137-159
GENEFINDER00000027469 3 56-78,88-110,117-136
Sequence
Target Sequence 
>C. ELEGANS:186177_S_AT
gcaccaacggcatcgatcgaacagtaaacggcgacaaagaagtcggtcaaggtatgacga
ctctgtttatgattccgaggcggatagggaaagggagagagagaggcgaagatcgaaaag
aaacagacaaggtggcagtcagaggagctcgtctaagaagcatcgagatgatcggaggga
tcgtgatcgggagagagacagaaatgatcgggacagaaatcgtgaacgggagcgagaaga
aagagaacgagagaatcgagacaacgaacgagggagacgagagagagaaagtgaggctcc
aagacgccggaaggaagatgaccgacgaagtcgtcaccaagattctcaagaagcctctgg
aggatctcaggaaatgtcattcccgttgtccggaggcatcacaattccccaacacatagt
gatccctccatcgtctggagaacgaggcccggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACCAACGGCATCGATCGAACAGT 290 315 1110 Antisense
ATGACGACTCTGTTTATGATTCCGA 482 45 1163 Antisense
AAGGTGGCAGTCAGAGGAGCTCGTC 165 159 1238 Antisense
GAGGAGCTCGTCTAAGAAGCATCGA 104 405 1251 Antisense
GAAAGTGAGGCTCCAAGACGCCGGA 177 359 1396 Antisense
GACGAAGTCGTCACCAAGATTCTCA 442 377 1433 Antisense
GATTCTCAAGAAGCCTCTGGAGGAT 185 431 1450 Antisense
CAGGAAATGTCATTCCCGTTGTCCG 479 209 1477 Antisense
CGTTGTCCGGAGGCATCACAATTCC 38 249 1493 Antisense
ATTCCCCAACACATAGTGATCCCTC 180 5 1513 Antisense
ATCGTCTGGAGAACGAGGCCCGGAC 570 33 1539 Antisense
Sequence Source Affymetrix Proprietary Database