[Home] | [Total List]

[186176_at] 7TM chemoreceptor, srv family

Description H04M03.8 /REP_DB=WormBase Gene ID /WP=CE20927 /TR=Q9TYR5 /GB=AAD12794.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 04      6grp_total > 34      4grp_total > 04      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 27.8
(-1.8)
A 		25.1
(-2)
A 		11.4
(-3)
A 		92.6
(3)
P 		81
B 77.8
(3)
P 		31
(-3)
M 		31.5
(-2.9)
P 		70.4
(2.1)
P 		47
C 41.8
(-2)
P 		30.9
(-2.5)
P 		18.8
(-3)
A 		159.7
(3)
P 		141
avr 49.1
(-1) 		29
(-2.4) 		20.6
(-3) 		107.6
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 108.2
(3)
A 		24.1
(-3)
A 		53.2
(-0.9)
P 		42.7
(-1.7)
A 		36.6
(-2.1)
A 		49.9
(-1.2)
P 		84
B 21.4
(-3)
A 		54.3
(2.2)
P 		59.2
(3)
A 		29.7
(-1.7)
A 		39.7
(-0.1)
P 		34.9
(-0.9)
P 		38
C 17.1
(-1.9)
A 		71.3
(3)
P 		29.3
(-0.8)
A 		56.4
(1.6)
A 		5.2
(-3)
A 		29
(-0.8)
A 		66
avr 48.9
(2.7) 		49.9
(3) 		47.2
(2.3) 		42.9
(1.1) 		27.2
(-3) 		37.9
(-0.2) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 10.1
(1)
A 		5.4
(-1.6)
A 		3
(-3)
A 		13.6
(3)
P 		11
B 24.8
(3)
P 		7.6
(-2.9)
M 		7.3
(-3)
P 		15
(-0.4)
P 		18
C 13.8
(-0.9)
P 		8.9
(-2.3)
P 		6.5
(-3)
A 		26.9
(3)
P 		20
avr 16.2
(1.9) 		7.3
(-2.2) 		5.6
(-3) 		18.5
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 19.9
(3)
A 		8.6
(-3)
A 		11.6
(-1.4)
P 		10.8
(-1.8)
A 		11
(-1.7)
A 		12.1
(-1.1)
P 		11
B 7.5
(-3)
A 		18.1
(3)
P 		14.4
(0.9)
A 		7.9
(-2.8)
A 		16.1
(1.9)
P 		13
(0.1)
P 		11
C 6.3
(-1.6)
A 		21.8
(3)
P 		7.5
(-1.3)
A 		11.3
(-0.1)
A 		1.7
(-3)
A 		9.7
(-0.6)
A 		20
avr 11.2
(-1.5) 		16.2
(3) 		11.2
(-1.5) 		10
(-2.6) 		9.6
(-3) 		11.6
(-1.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186176_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11178
Sequence Type Exemplar sequence
Representative Public ID H04M03.8 NCBI
Target Description H04M03.8 /REP_DB=WormBase Gene ID /WP=CE20927 /TR=Q9TYR5 /GB=AAD12794.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068479(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068479 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-21) (srv-21) mRNA, complete cds. 11/11 None
GENEFINDER00000034806 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5871961:5877331:-1 11/11 None
H04M03.8 ENSEMBL cdna:known chromosome:CEL140:IV:5876077:5877331:-1 gene:H04M03.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034799 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5876082-5877337(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srv family
Gene Symbol srv-21
Ensembl H04M03.8
Entrez Gene 186686 Entrez gene
SwissProt Q9TYR5 EMBL-EBI
WormBase CE20927 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12794 Serpentine receptor, class v protein 21 [Caenorhabditis elegans] ref|NP_500880.1| Serpentine Receptor, class V family member (srv-21) [Caenorhabditis elegans] 0.0
blast AAD12794 Serpentine receptor, class v protein 21 [Caenorhabditis elegans] ref|NP_500880.1| Serpentine Receptor, class V family member (srv-21) [Caenorhabditis elegans] 1.0E-173
blast AAD12792 Serpentine receptor, class v protein 19 [Caenorhabditis elegans] ref|NP_500878.1| Serpentine Receptor, class V family member (srv-19) [Caenorhabditis elegans] 1.0E-132
blast T33860 hypothetical protein H04M03.7 - Caenorhabditis elegans 1.0E-126
blast AAD12792 Serpentine receptor, class v protein 19 [Caenorhabditis elegans] ref|NP_500878.1| Serpentine Receptor, class V family member (srv-19) [Caenorhabditis elegans] 2.0E-94
blast AAA82284 Serpentine receptor, class v protein 17 [Caenorhabditis elegans] ref|NP_500876.2| Serpentine Receptor, class V family member (srv-17) [Caenorhabditis elegans] 9.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 4.7E-77
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500880.1 7 23-45,58-80,95-117,147-169,192-214,235-257,277-299
H04M03.8 7 23-45,58-80,95-117,147-169,192-214,235-257,277-299
GENEFINDER00000034806 19 23-45,58-80,95-117,147-169,192-214,235-257,277-299,344-366,391-413,426-448,468-487,552-574,589-611,624-643,671-693,713-732,758-777,797-819,839-856
Sequence
Target Sequence 
>C. ELEGANS:186176_AT
attggtttcctccagttattttctgcgtaatattttattcgcatatggatattacgtatg
attccccagagcaaatgaagtatgttacggatccagatgttatcgagggatcatctagaa
ccgcattcttctacgttctattttcttgtttaatctgtctgatatgctacggatttattt
taaaaattgtacggtcaaaaagtcaaacagcgtcagtatccattcagcgagaagttcgat
tagcatttcaagttttactgtcgtttttggcaaaattagtaatgatgatttattttttgc
taatttttataacctctttgtgctctgcgggtacaattagagatatggtattcgttgttg
cagttagaagaaacttcccaacagcatacggaactttatccttcattgggccattcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGTTTCCTCCAGTTATTTTCTG 259 3 464 Antisense
TATTACGTATGATTCCCCAGAGCAA 568 663 513 Antisense
CGAGGGATCATCTAGAACCGCATTC 568 247 567 Antisense
AGAACCGCATTCTTCTACGTTCTAT 693 73 580 Antisense
GTTCTATTTTCTTGTTTAATCTGTC 511 443 598 Antisense
AAACAGCGTCAGTATCCATTCAGCG 462 129 668 Antisense
GTTCGATTAGCATTTCAAGTTTTAC 12 441 697 Antisense
TTTTTATAACCTCTTTGTGCTCTGC 545 675 767 Antisense
GATATGGTATTCGTTGTTGCAGTTA 444 425 805 Antisense
GAAACTTCCCAACAGCATACGGAAC 469 317 833 Antisense
CTTTATCCTTCATTGGGCCATTCAC 686 221 857 Antisense
Sequence Source Affymetrix Proprietary Database