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[186175_at]

Description F41H10.9 /REP_DB=WormBase Gene ID /WP=CE10288 /TR=Q20304 /GB=AAK29806.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 24.6
(-1.3)
A 		11.2
(-2.4)
A 		5
(-3)
A 		72.4
(3)
A 		67
B 36.3
(0.8)
A 		14
(-3)
A 		49.6
(3)
A 		27.3
(-0.8)
A 		36
C 44
(-2.4)
A 		43.7
(-2.5)
A 		39.6
(-3)
A 		84.5
(3)
A 		45
avr 35
(-1.1) 		23
(-3) 		31.4
(-1.7) 		61.4
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 60.7
(3)
A 		35.4
(0.4)
A 		14.3
(-1.8)
A 		2.5
(-3)
A 		56.4
(2.6)
A 		6.2
(-2.6)
A 		58
B 53.1
(2.9)
A 		11
(-3)
A 		26.6
(-0.8)
A 		54
(3)
P 		20.7
(-1.6)
A 		21.6
(-1.5)
A 		43
C 24
(-1.1)
A 		46.4
(1.1)
A 		7
(-2.8)
A 		65.1
(3)
A 		5.5
(-3)
A 		30.2
(-0.5)
A 		60
avr 45.9
(3) 		30.9
(-0) 		16
(-3) 		40.5
(1.9) 		27.5
(-0.7) 		19.3
(-2.3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9
(2)
A 		2.4
(-2.3)
A 		1.3
(-3)
A 		10.6
(3)
A 		9
B 11.6
(3)
A 		3.5
(-3)
A 		11.5
(2.9)
A 		5.8
(-1.3)
A 		8
C 14.6
(3)
A 		12.6
(-3)
A 		13.8
(0.6)
A 		14.2
(1.8)
A 		2
avr 11.7
(3) 		6.2
(-3) 		8.9
(-0.1) 		10.2
(1.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 11.2
(0.9)
A 		12.6
(1.4)
A 		3.1
(-2.1)
A 		0.6
(-3)
A 		17
(3)
A 		1.5
(-2.7)
A 		16
B 18.5
(3)
A 		3.7
(-3)
A 		6.5
(-1.9)
A 		14.3
(1.3)
P 		8.4
(-1.1)
A 		8.1
(-1.2)
A 		15
C 8.9
(0.5)
A 		14.1
(3)
A 		1.8
(-3)
A 		13.1
(2.5)
A 		1.8
(-3)
A 		10.1
(1)
A 		12
avr 12.9
(3) 		10.1
(1.2) 		3.8
(-3) 		9.3
(0.6) 		9.1
(0.5) 		6.6
(-1.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186175_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10768
Sequence Type Exemplar sequence
Representative Public ID F41H10.9 NCBI
Target Description F41H10.9 /REP_DB=WormBase Gene ID /WP=CE10288 /TR=Q20304 /GB=AAK29806.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068397(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068397 NCBI Caenorhabditis elegans F41H10.9 (F41H10.9) mRNA, complete cds. 10/11 None
F41H10.9 ENSEMBL cdna:known chromosome:CEL140:IV:5389542:5390168:-1 gene:F41H10.9 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5389288-5390174(-) 93.58 100.0
Public Domain and Genome References
Gene Title
Ensembl F41H10.9
Entrez Gene 177322 Entrez gene
SwissProt Q20304 EMBL-EBI
WormBase CE32414 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29806 Hypothetical protein F41H10.9 [Caenorhabditis elegans] ref|NP_500798.2| F41H10.9 [Caenorhabditis elegans] 1.0E-57
blast A88691 protein F41H10.9 [imported] - Caenorhabditis elegans 9.0E-41
Sequence
Target Sequence 
>C. ELEGANS:186175_AT
gtttcccatgactccattttcaagatactccagtgcatttcagaatttttcaacaattga
ccaatctaaaaaggattctctcttttcttcttctgctggataccgctccgagtatctttc
ggtaaatctcgaaattctctttgtattcaccattcatgctgacctcgataacttttctca
agaaagagcagtcgcgcctgtcgccaacaaaatggatcgtggcgagacctatcgagagaa
aaataaaatactggaaattcaaactcttcttaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCCCATGACTCCATTTTCAAGA 175 451 15 Antisense
CTCCATTTTCAAGATACTCCAGTGC 615 233 26 Antisense
GATACTCCAGTGCATTTCAGAATTT 285 423 38 Antisense
TAAAAAGGATTCTCTCTTTTCTTCT 62 605 81 Antisense
TGGATACCGCTCCGAGTATCTTTCG 75 551 111 Antisense
GAAATTCTCTTTGTATTCACCATTC 668 361 145 Antisense
TGTATTCACCATTCATGCTGACCTC 170 561 156 Antisense
TGCTGACCTCGATAACTTTTCTCAA 672 579 171 Antisense
CAAGAAAGAGCAGTCGCGCCTGTCG 644 183 193 Antisense
GCGCCTGTCGCCAACAAAATGGATC 8 289 208 Antisense
CTGGAAATTCAAACTCTTCTTAATA 30 241 265 Antisense
Sequence Source Affymetrix Proprietary Database