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[186174_at]

Description H04M03.5 /REP_DB=WormBase Gene ID /WP=CE20924 /TR=Q9TYR8 /GB=AAD12790.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 03      6grp_cgc > 51      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 33.3
(-2.8)
A 		31.9
(-3)
A 		37.3
(-2.3)
A 		77.8
(3)
A 		46
B 20.9
(-0.8)
A 		6.5
(-3)
A 		11.5
(-2.2)
A 		46.3
(3)
A 		40
C 29
(-1.6)
A 		28.4
(-1.6)
A 		4.3
(-3)
A 		107.1
(3)
P 		103
avr 27.7
(-2) 		22.3
(-2.5) 		17.7
(-3) 		77.1
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 36.5
(1.2)
A 		8.6
(-2.3)
A 		51.2
(3)
A 		7.1
(-2.5)
A 		18.1
(-1.2)
A 		3.4
(-3)
A 		48
B 37.5
(3)
A 		9.3
(-1.7)
A 		2.1
(-2.9)
A 		12.2
(-1.2)
A 		31
(1.9)
P 		1.7
(-3)
A 		36
C 4.4
(-3)
A 		64.4
(3)
A 		4.6
(-3)
A 		61.4
(2.7)
A 		5.2
(-2.9)
A 		8.2
(-2.6)
A 		60
avr 26.1
(2.7) 		27.4
(3) 		19.3
(0.9) 		26.9
(2.9) 		18.1
(0.6) 		4.4
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 12.1
(3)
A 		6.9
(-3)
A 		9.8
(0.3)
A 		11.4
(2.2)
A 		5
B 6.7
(0.7)
A 		1.6
(-3)
A 		2.7
(-2.2)
A 		9.9
(3)
A 		8
C 9.6
(-0.1)
A 		8.2
(-0.6)
A 		1.5
(-3)
A 		18.1
(3)
P 		17
avr 9.5
(0.4) 		5.6
(-2.4) 		4.7
(-3) 		13.1
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6.7
(0.4)
A 		3
(-1.7)
A 		11.1
(3)
A 		1.8
(-2.4)
A 		5.5
(-0.3)
A 		0.8
(-3)
A 		10
B 13.1
(3)
A 		3.1
(-1.8)
A 		0.5
(-3)
A 		3.2
(-1.7)
A 		12.6
(2.8)
P 		0.6
(-3)
A 		13
C 1.6
(-2.9)
A 		19.7
(3)
A 		1.2
(-3)
A 		12.3
(0.6)
A 		1.7
(-2.8)
A 		2.8
(-2.5)
A 		19
avr 7.1
(1.8) 		8.6
(3) 		4.3
(-0.6) 		5.8
(0.7) 		6.6
(1.3) 		1.4
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186174_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11194
Sequence Type Exemplar sequence
Representative Public ID H04M03.5 NCBI
Target Description H04M03.5 /REP_DB=WormBase Gene ID /WP=CE20924 /TR=Q9TYR8 /GB=AAD12790.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
H04M03.5 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:5871128:5871722:-1 gene:H04M03.5 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034798 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5871133-5871965(-) 100.0 100.0
Public Domain and Genome References
Ensembl H04M03.5
Sequence
Target Sequence 
>C. ELEGANS:186174_AT
tctgtgctctcttctaagatctttcgttgcaatatttttgtcaagtccggacactacatt
tgactcgccagagagaatggtttttagcatgttttcggatgttatcccgaaaacaacaag
gacattcatttatgtactgatttcctgtatggtgtctttgatattatatggatccttgcg
gcgggaactgagacttacatgccaagtatgcttatcatttgctgctcaacttatattatt
ggtctacctttcatttgcatattatgtgggtgaaattggcgatgttgcttatatagtttt
aactacaaaatattttccgcttgcatatggaactatcttcttcatcgggccattagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGTGCTCTCTTCTAAGATCTTTC 43 609 18 Antisense
AAGATCTTTCGTTGCAATATTTTTG 683 153 33 Antisense
ACACTACATTTGACTCGCCAGAGAG 104 109 68 Antisense
TTAGCATGTTTTCGGATGTTATCCC 34 683 101 Antisense
GTACTGATTTCCTGTATGGTGTCTT 483 459 151 Antisense
ATATGGATCCTTGCGGCGGGAACTG 636 19 183 Antisense
GCGGGAACTGAGACTTACATGCCAA 34 293 198 Antisense
GTATGCTTATCATTTGCTGCTCAAC 337 455 223 Antisense
ATTGGTCTACCTTTCATTTGCATAT 554 3 255 Antisense
CCGCTTGCATATGGAACTATCTTCT 214 261 334 Antisense
TATCTTCTTCATCGGGCCATTAGCA 346 659 351 Antisense
Sequence Source Affymetrix Proprietary Database