[Home] | [Total List]

[186173_s_at]

Description C10G11.1 /REP_DB=WormBase Gene ID /WP=CE08080 /TR=P91034 /GB=AAB42241.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 17      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 5
(-2.7)
A 		3.7
(-3)
A 		6.5
(-2.4)
A 		30.6
(3)
A 		27
B 17.7
(-0.2)
A 		5.8
(-2.9)
A 		5.3
(-3)
A 		31.6
(3)
A 		26
C 5.8
(-3)
A 		57
(0.1)
A 		39
(-1)
A 		105
(3)
M 		99
avr 9.5
(-3) 		22.2
(-1.4) 		16.9
(-2) 		55.7
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 27.7
(2.3)
A 		30.7
(3)
A 		4.4
(-3)
A 		4.5
(-3)
A 		5.6
(-2.7)
A 		17.2
(-0.1)
A 		26
B 5.9
(-2.6)
A 		5
(-2.8)
A 		4.9
(-2.8)
A 		4.1
(-3)
A 		4.8
(-2.8)
A 		30.6
(3)
A 		27
C 5.5
(-2.2)
A 		12.3
(-0.3)
A 		4
(-2.6)
A 		2.6
(-3)
A 		23.9
(3)
A 		21.2
(2.2)
A 		21
avr 13
(-0.1) 		16
(0.8) 		4.4
(-2.8) 		3.7
(-3) 		11.4
(-0.6) 		23
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.8
(-1.4)
A 		0.8
(-3)
A 		1.7
(-1.5)
A 		4.5
(3)
A 		4
B 5.6
(1.8)
A 		1.4
(-2.8)
A 		1.2
(-3)
A 		6.7
(3)
A 		6
C 1.9
(-3)
A 		16.4
(2.5)
A 		13.6
(1.4)
A 		17.7
(3)
M 		16
avr 3.1
(-3) 		6.2
(-0.1) 		5.5
(-0.8) 		9.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.1
(-0.5)
A 		10.9
(3)
A 		1
(-3)
A 		1.1
(-2.9)
A 		1.7
(-2.6)
A 		4.2
(-1.1)
A 		10
B 2.1
(-2.4)
A 		1.7
(-2.7)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		1.9
(-2.5)
A 		11.4
(3)
A 		10
C 2
(-1.8)
A 		3.8
(-0.3)
A 		1
(-2.6)
A 		0.5
(-3)
A 		7.7
(3)
A 		7.1
(2.5)
A 		7
avr 3.1
(-1) 		5.5
(1.1) 		1.1
(-2.8) 		0.9
(-3) 		3.8
(-0.4) 		7.6
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186173_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.809
Sequence Type Exemplar sequence
Representative Public ID C10G11.1 NCBI
Target Description C10G11.1 /REP_DB=WormBase Gene ID /WP=CE08080 /TR=P91034 /GB=AAB42241.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059418(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059418 NCBI Caenorhabditis elegans C10G11.10 (C10G11.10) mRNA, complete cds. 11/11 A 
SNAP00000041164 ENSEMBL cdna:SNAP chromosome:CEL140:I:6313167:6314444:-1 11/11 None
GENEFINDER00000041171 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6313167:6315036:-1 10/11 None
C10G11.10 ENSEMBL cdna:known chromosome:CEL140:I:6313167:6314490:-1 gene:C10G11.10 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059419 8/11 Cross Hyb Matching Probes A 
SNAP00000041712 1/11 Cross Hyb Matching Probes None
C10G11.1 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6315462-6316493(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10G11.10
Entrez Gene 182507 Entrez gene
SwissProt P91033 EMBL-EBI
WormBase CE08089 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42249 Hypothetical protein C10G11.10 [Caenorhabditis elegans] ref|NP_491819.1| C10G11.10 [Caenorhabditis elegans] 6.0E-95
blast AAB42249 Hypothetical protein C10G11.10 [Caenorhabditis elegans] ref|NP_491819.1| C10G11.10 [Caenorhabditis elegans] 5.0E-90
blast AAB42249 Hypothetical protein C10G11.10 [Caenorhabditis elegans] ref|NP_491819.1| C10G11.10 [Caenorhabditis elegans] 7.0E-90
blast CAE60333 Hypothetical protein CBG03925 [Caenorhabditis briggsae] 2.0E-14
blast CAE60333 Hypothetical protein CBG03925 [Caenorhabditis briggsae] 3.0E-14
blast AAB42241 Hypothetical protein C10G11.1 [Caenorhabditis elegans] ref|NP_491820.2| C10G11.1 [Caenorhabditis elegans] 5.0E-13
blast AAB42241 Hypothetical protein C10G11.1 [Caenorhabditis elegans] ref|NP_491820.2| C10G11.1 [Caenorhabditis elegans] 6.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491819.1 1 5-27
C10G11.10 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:186173_S_AT
gaaattctaaccttgatttgtcatttgattcccattcttcgtcgaaaaagaaagagccac
accgtccatccgtatctccgacaaacacaaatgttggaacaactcagtctagttcaccgg
ctttaacaccaatacagagaactcctactaaaccggattctgatgatgatgacgttaaat
tcaacataaccgtcaaggcaccagtggagaaaaaggatgagtttgaaggtgatgatgaag
agaatccgttggctaaacttgcactcaaaacaaaacctaaaaaacctgttgatgcggcaa
tacctgcgcctctgaagacaccagcgaaggcacctcgaacaagaacaaaagagagtgcga
ttgctccggaacgtgtattcctggcgccaaatgaaaagcagattggggtttctcgctacc
aattcgaggcttcacagccacctaccacaaacaacaatgctctgactaagaaacaatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATTCTAACCTTGATTTGTCATT 120 363 26 Antisense
TGATTTGTCATTTGATTCCCATTCT 301 565 39 Antisense
GATGATGATGACGTTAAATTCAACA 374 411 187 Antisense
AATTCAACATAACCGTCAAGGCACC 673 175 203 Antisense
ACATAACCGTCAAGGCACCAGTGGA 703 103 209 Antisense
AACCGTCAAGGCACCAGTGGAGAAA 84 145 213 Antisense
GATGAAGAGAATCCGTTGGCTAAAC 170 413 259 Antisense
AAGAGAGTGCGATTGCTCCGGAACG 527 153 374 Antisense
TGCGATTGCTCCGGAACGTGTATTC 506 583 381 Antisense
TGCTCCGGAACGTGTATTCCTGGCG 550 567 387 Antisense
AATGCTCTGACTAAGAAACAATCTG 10 167 481 Antisense
Sequence Source Affymetrix Proprietary Database