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[186172_at]

Description C10G11.1 /REP_DB=WormBase Gene ID /WP=CE08080 /TR=P91034 /GB=AAB42241.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 2.9
(-3)
A 		11.6
(-2.3)
A 		20.4
(-1.6)
A 		76.2
(3)
A 		73
B 11
(-3)
A 		12.5
(-1.7)
A 		18
(3)
A 		16.4
(1.6)
A 		7
C 16.8
(-2.1)
A 		21.5
(-1.6)
A 		7.3
(-3)
A 		67.8
(3)
A 		61
avr 10.2
(-3) 		15.2
(-2.3) 		15.2
(-2.3) 		53.5
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 13.5
(1.7)
A 		10.1
(-1.9)
A 		14.8
(3)
A 		14.5
(2.7)
A 		9.7
(-2.3)
A 		9
(-3)
A 		6
B 8.4
(-3)
A 		11.6
(1.9)
A 		10.9
(0.8)
A 		9.2
(-1.8)
A 		10.6
(0.4)
A 		12.3
(3)
A 		4
C 9.8
(-2.3)
A 		14.1
(-1.2)
A 		12.5
(-1.6)
A 		31.8
(3)
A 		6.8
(-3)
A 		8.7
(-2.5)
A 		25
avr 10.6
(-2) 		11.9
(-1.2) 		12.7
(-0.7) 		18.5
(3) 		9
(-3) 		10
(-2.4) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.1
(-3)
A 		2.5
(-2.2)
A 		5.3
(-0.5)
A 		11.1
(3)
A 		10
B 3.5
(-0.8)
A 		3.1
(-3)
A 		4.2
(3)
A 		3.5
(-0.8)
A 		1
C 5.6
(-0.9)
A 		6.2
(-0.5)
A 		2.5
(-3)
A 		11.4
(3)
A 		9
avr 3.4
(-3) 		3.9
(-2.4) 		4
(-2.3) 		8.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 2.5
(-1.8)
A 		3.6
(2.6)
A 		3.2
(1)
A 		3.7
(3)
A 		2.9
(-0.2)
A 		2.2
(-3)
A 		2
B 2.9
(-1.6)
A 		3.9
(1.1)
A 		2.7
(-2.2)
A 		2.4
(-3)
A 		4.3
(2.2)
A 		4.6
(3)
A 		2
C 3.6
(-1)
A 		4.3
(-0)
A 		3.2
(-1.6)
A 		6.4
(3)
A 		2.2
(-3)
A 		2.9
(-2)
A 		4
avr 3
(-3) 		3.9
(1.5) 		3
(-3) 		4.2
(3) 		3.1
(-2.5) 		3.2
(-2) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186172_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.809
Sequence Type Exemplar sequence
Representative Public ID C10G11.1 NCBI
Target Description C10G11.1 /REP_DB=WormBase Gene ID /WP=CE08080 /TR=P91034 /GB=AAB42241.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059419(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059419 NCBI Caenorhabditis elegans C10G11.1 (C10G11.1) mRNA, complete cds. 11/11 A 
C10G11.1 ENSEMBL cdna:known chromosome:CEL140:I:6315562:6316564:1 gene:C10G11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041712 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6315462-6316493(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10G11.1
Entrez Gene 182505 Entrez gene
SwissProt P91034 EMBL-EBI
WormBase CE34257 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42241 Hypothetical protein C10G11.1 [Caenorhabditis elegans] ref|NP_491820.2| C10G11.1 [Caenorhabditis elegans] 2.0E-17
blast AAB42249 Hypothetical protein C10G11.10 [Caenorhabditis elegans] ref|NP_491819.1| C10G11.10 [Caenorhabditis elegans] 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:186172_AT
aaaaagaaagagccacaccgtccatccgtatctccgacaaacacaaatgttggaacaact
cagtctagttcaccggctttaacaccaatacagagaactcctactaaaccggattctgat
gatgatgacgttaaattcaacataaccgtcaaggcaccagtggagaaaaaggatgagttt
gaaggtgatgatgaagagaatccgttggctaaacttgcactcaaaacaaaacctaaaaaa
cctgttgatgcggcaatacctgcgcctctgaagacaccagcgaaggcacctcgaacaaga
acaaaagagagtgcgattgctccggaacgtgtattcctggcgccaaatgaaaagcagatt
ggggtttctcgctaccaattcgaggcttcacagccacctaccacaaacaacaatgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAAGAAAGAGCCACACCGTCCAT 664 129 70 Antisense
ATCCGTATCTCCGACAAACACAAAT 108 39 93 Antisense
AACAACTCAGTCTAGTTCACCGGCT 486 135 123 Antisense
GTTCACCGGCTTTAACACCAATACA 549 439 137 Antisense
GAACTCCTACTAAACCGGATTCTGA 284 347 164 Antisense
TCCGTTGGCTAAACTTGCACTCAAA 475 593 270 Antisense
TGTTGATGCGGCAATACCTGCGCCT 499 563 312 Antisense
CTGAAGACACCAGCGAAGGCACCTC 237 239 337 Antisense
GATTGGGGTTTCTCGCTACCAATTC 494 433 426 Antisense
CCAATTCGAGGCTTCACAGCCACCT 332 277 444 Antisense
GCCACCTACCACAAACAACAATGCT 464 279 462 Antisense
Sequence Source Affymetrix Proprietary Database