[Home] | [Total List]

[186171_at]

Description Y44E3A.1 /REP_DB=WormBase Gene ID /WP=CE21926 /TR=Q9TXZ1 /GB=AAC78227.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 95      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 92      6grp_total > 85      4grp_total > 24      6grp_highest_sub > In      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 653
1 2 3 4 range
A 73.9
(-3)
P 		194.6
(-0.2)
P 		185.3
(-0.4)
P 		332.9
(3)
P 		259
B 73.1
(-3)
P 		189.1
(-1.9)
P 		258.2
(-1.3)
P 		722.4
(3)
P 		649
C 69.9
(-3)
P 		216.7
(-0.7)
P 		445.4
(3)
P 		395.7
(2.2)
P 		376
avr 72.3
(-3) 		200.1
(-1.1) 		296.3
(0.3) 		483.7
(3) 		411

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 492
1 2 3 4 5 6 range
A 166.9
(-3)
P 		276.1
(-0.3)
P 		238.3
(-1.2)
P 		410.7
(3)
P 		252.8
(-0.9)
P 		383.9
(2.3)
P 		244
B 157.1
(-3)
P 		252.3
(-0.1)
P 		292.9
(1.1)
P 		273.2
(0.5)
P 		356.7
(3)
P 		324.7
(2)
P 		200
C 276.2
(-1.4)
P 		203.6
(-2.3)
P 		142.8
(-3)
P 		385
(-0)
P 		433.7
(0.5)
P 		635
(3)
P 		492
avr 200.1
(-3) 		244
(-1.9) 		224.7
(-2.4) 		356.3
(0.8) 		347.7
(0.6) 		447.9
(3) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 26.9
(-3)
P 		42.2
(1.2)
P 		48.5
(2.9)
P 		48.7
(3)
P 		22
B 23.3
(-3)
P 		46.7
(-1.9)
P 		59.8
(-1.3)
P 		153.9
(3)
P 		131
C 23.2
(-3)
P 		62.3
(-1.2)
P 		155.2
(3)
P 		66.7
(-1)
P 		132
avr 24.5
(-3) 		50.4
(-0.6) 		87.8
(2.8) 		89.8
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 30.8
(-3)
P 		98.2
(2.5)
P 		51.9
(-1.3)
P 		104.2
(3)
P 		76.3
(0.7)
P 		93.5
(2.1)
P 		73
B 54.7
(-3)
P 		84
(-1.1)
P 		71.1
(-1.9)
P 		72.4
(-1.8)
P 		144.9
(3)
P 		121.1
(1.4)
P 		90
C 102.4
(-0.8)
P 		62.1
(-2.1)
P 		36.3
(-3)
P 		77.4
(-1.6)
P 		140.3
(0.5)
P 		212.6
(3)
P 		176
avr 62.6
(-2.4) 		81.4
(-1.1) 		53.1
(-3) 		84.7
(-0.9) 		120.5
(1.5) 		142.4
(3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186171_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.185
Sequence Type Exemplar sequence
Representative Public ID Y44E3A.1 NCBI
Target Description Y44E3A.1 /REP_DB=WormBase Gene ID /WP=CE21926 /TR=Q9TXZ1 /GB=AAC78227.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058744(11), NM_182078(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058744 NCBI Caenorhabditis elegans Y44E3A.1a (Y44E3A.1) mRNA, complete cds. 11/11 None
NM_182078 NCBI Caenorhabditis elegans Y44E3A.1b (Y44E3A.1) mRNA, complete cds. 10/11 None
GENEFINDER00000005142 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3338368:3340026:1 11/11 None
Y44E3A.1a ENSEMBL cdna:known chromosome:CEL140:I:3338368:3340026:1 gene:Y44E3A.1 11/11 None
Y44E3A.1b ENSEMBL cdna:known chromosome:CEL140:I:3338368:3340004:1 gene:Y44E3A.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3338367-3340026(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y44E3A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491145 Y44E3A.1a [Caenorhabditis elegans] gb|AAC78227.1| Hypothetical protein Y44E3A.1a [Caenorhabditis elegans] 4.0E-84
blast NP_871878 Y44E3A.1b [Caenorhabditis elegans] gb|AAO21410.1| Hypothetical protein Y44E3A.1b [Caenorhabditis elegans] 7.0E-41
blast NP_871878 Y44E3A.1b [Caenorhabditis elegans] gb|AAO21410.1| Hypothetical protein Y44E3A.1b [Caenorhabditis elegans] 6.0E-38
blast NP_491145 Y44E3A.1a [Caenorhabditis elegans] gb|AAC78227.1| Hypothetical protein Y44E3A.1a [Caenorhabditis elegans] 8.0E-38
Sequence
Target Sequence 
>C. ELEGANS:186171_AT
agcgaacaccacgagatattccaatttgctatttctctcctctctgagtctcccactttc
ctgcactctctcgttccaccgccagctgttccgctggccttccgcgtgaccgattatgcc
gtacggagagtgtccgagaagcaaaatattctccttcacaattattttctaaacaaatat
gaaataggaaaaatgaatgccgaaattgtattagttggtgatgcgtttttcaatgaaaga
gcccaatatcacggatttctgcgtctcaactaccgaattcttcatcgctatgagcaaatt
catgagattttccttttttcgctaaacaatgcgagaacaatggcccagcgagagtatgaa
attaggaaattagaaggtattaatgcaattattattagcactcgaaacatgattctatcc
tgcgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGAACACCACGAGATATTCCAAT 48 81 19 Antisense
TATTCCAATTTGCTATTTCTCTCCT 118 665 35 Antisense
CCGCGTGACCGATTATGCCGTACGG 265 261 120 Antisense
AAGCAAAATATTCTCCTTCACAATT 53 151 157 Antisense
GAGCCCAATATCACGGATTTCTGCG 39 385 257 Antisense
TATCACGGATTTCTGCGTCTCAACT 442 655 265 Antisense
CGTCTCAACTACCGAATTCTTCATC 629 245 280 Antisense
ACCGAATTCTTCATCGCTATGAGCA 332 89 290 Antisense
CATGAGATTTTCCTTTTTTCGCTAA 121 211 319 Antisense
AATGCGAGAACAATGGCCCAGCGAG 616 165 346 Antisense
CGAAACATGATTCTATCCTGCGAGA 395 253 421 Antisense
Sequence Source Affymetrix Proprietary Database