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[186168_at]

Description T06A10.4 /REP_DB=WormBase Gene ID /WP=CE19561 /TR=Q9TZ44 /GB=AAK39273.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 89      6grp_total > 98      4grp_total > 12      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 188.8
(-2.3)
A 		176.5
(-3)
A 		194.7
(-1.9)
P 		276.2
(3)
P 		100
B 214.7
(-0.5)
M 		183.4
(-1.8)
A 		155.3
(-3)
M 		295.3
(3)
P 		140
C 231.3
(0.1)
P 		204.8
(-1.6)
A 		181.4
(-3)
P 		279.2
(3)
A 		98
avr 211.6
(-1.1) 		188.2
(-2.4) 		177.1
(-3) 		283.6
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 370
1 2 3 4 5 6 range
A 175.5
(-3)
P 		189.2
(-2.6)
P 		230.2
(-1.3)
A 		268.3
(-0.2)
P 		373.3
(3)
P 		253.3
(-0.6)
P 		198
B 281
(-0.6)
P 		201.4
(-2)
P 		145.2
(-3)
P 		264.8
(-0.8)
P 		385.8
(1.3)
P 		478.4
(3)
P 		333
C 202.5
(-2.1)
P 		154.1
(-2.9)
P 		149.1
(-3)
P 		206.6
(-2.1)
P 		429.1
(1.6)
P 		514.9
(3)
P 		366
avr 219.7
(-1.9) 		181.6
(-2.8) 		174.8
(-3) 		246.6
(-1.2) 		396.1
(2.5) 		415.5
(3) 		241
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 68.8
(3)
A 		38.3
(-3)
A 		50.9
(-0.5)
P 		40.4
(-2.6)
P 		31
B 68.5
(3)
M 		45.3
(-1.3)
A 		36
(-3)
M 		62.9
(2)
P 		33
C 76.6
(3)
P 		58.9
(-0.6)
A 		63.2
(0.3)
P 		47.1
(-3)
A 		30
avr 71.3
(3) 		47.5
(-3) 		50
(-2.4) 		50.1
(-2.3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 32.3
(-3)
P 		67.3
(-0.4)
P 		50.1
(-1.7)
A 		68
(-0.3)
P 		112.6
(3)
P 		61.7
(-0.8)
P 		80
B 97.8
(-0.4)
P 		67
(-1.7)
P 		35.3
(-3)
P 		70.1
(-1.5)
P 		156.8
(2.1)
P 		178.4
(3)
P 		143
C 75.1
(-1.3)
P 		47
(-2.6)
P 		38
(-3)
P 		41.5
(-2.8)
P 		138.9
(1.5)
P 		172.4
(3)
P 		134
avr 68.4
(-1.3) 		60.4
(-1.8) 		41.1
(-3) 		59.9
(-1.8) 		136.1
(2.9) 		137.5
(3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186168_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9557
Sequence Type Exemplar sequence
Representative Public ID T06A10.4 NCBI
Target Description T06A10.4 /REP_DB=WormBase Gene ID /WP=CE19561 /TR=Q9TZ44 /GB=AAK39273.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070598 NCBI Caenorhabditis elegans T06A10.4 (T06A10.4) mRNA, complete cds. 11/11 A 
SNAP00000020714 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16863827:16865284:1 11/11 None
GENEFINDER00000020722 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16864708:16865284:1 9/11 None
T06A10.4 ENSEMBL cdna:known chromosome:CEL140:IV:16862355:16865416:1 gene:T06A10.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000020724 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16863839-16865290(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06A10.4
Entrez Gene 178470 Entrez gene
SwissProt Q965G8 EMBL-EBI
WormBase CE19561 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK73894 Hypothetical protein T06A10.4 [Caenorhabditis elegans] ref|NP_502999.1| T06A10.4 [Caenorhabditis elegans] 1.0E-130
blast AAK73894 Hypothetical protein T06A10.4 [Caenorhabditis elegans] ref|NP_502999.1| T06A10.4 [Caenorhabditis elegans] 1.0E-87
blast CAE68062 Hypothetical protein CBG13684 [Caenorhabditis briggsae] 2.0E-31
blast CAE68062 Hypothetical protein CBG13684 [Caenorhabditis briggsae] 1.0E-18
blast CAE58905 Hypothetical protein CBG02160 [Caenorhabditis briggsae] 6.0E-17
Sequence
Target Sequence 
>C. ELEGANS:186168_AT
attatgaggaaatgacggccgaacaaaagaccaaagcgttcacttttatgcagaagaaaa
tggcgaaagtttccgaatattccgaccaaaaaatagagattgcgagcggtttgaaggttc
ttctgaaggatgtctacgggaaattcatggaagaagagcaaaagttcattgaaaacctga
ataagattccaaaagcaccggaaactccgccaagcagttctccgtcagtgcgaagtcatc
gtaagaagaagctttccgagggagatgatgatgctccgtcgtcggtggatgagaagaagc
gcggtcggaagaaaaagccagaatccgagaaagcagtggccgccgccgagccaccgaaaa
tgtactgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATGAGGAAATGACGGCCGAACA 215 5 179 Antisense
GACCAAAGCGTTCACTTTTATGCAG 402 383 207 Antisense
TTGCGAGCGGTTTGAAGGTTCTTCT 587 693 278 Antisense
GTTCTTCTGAAGGATGTCTACGGGA 693 443 295 Antisense
CAAAAGCACCGGAAACTCCGCCAAG 453 189 368 Antisense
TTCTCCGTCAGTGCGAAGTCATCGT 568 693 396 Antisense
GAAGAAGCTTTCCGAGGGAGATGAT 10 341 423 Antisense
TGATGCTCCGTCGTCGGTGGATGAG 161 567 447 Antisense
GTGGATGAGAAGAAGCGCGGTCGGA 448 489 463 Antisense
GAATCCGAGAAAGCAGTGGCCGCCG 248 325 499 Antisense
CGCCGAGCCACCGAAAATGTACTGC 318 257 522 Antisense
Sequence Source Affymetrix Proprietary Database