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[186167_at]

Description T05H4.10 /REP_DB=WormBase Gene ID /WP=CE27439 /TR=O16515 /GB=AAB66016.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 87      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 85      6grp_total > 77      4grp_total > 21      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 639
1 2 3 4 range
A 1052.3
(0.3)
P 		773.3
(-2.3)
P 		699.5
(-3)
P 		1334.1
(3)
P 		635
B 999.6
(1.5)
P 		765.1
(-2.2)
P 		714.6
(-3)
P 		1090.8
(3)
P 		376
C 1026.2
(1)
P 		918.3
(-0.3)
P 		695.3
(-3)
P 		1187.6
(3)
P 		492
avr 1026
(0.9) 		818.9
(-1.6) 		703.1
(-3) 		1204.2
(3) 		501

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 767
1 2 3 4 5 6 range
A 820.6
(0.7)
P 		658.8
(-3)
P 		745.7
(-1)
P 		852.1
(1.4)
P 		683.3
(-2.4)
P 		921.5
(3)
P 		263
B 669.2
(-1.2)
P 		643.4
(-1.4)
P 		452.4
(-3)
P 		836.6
(0.3)
P 		815.7
(0.1)
P 		1160.8
(3)
P 		708
C 624.6
(-3)
P 		724.5
(-2)
P 		686.6
(-2.4)
P 		785.5
(-1.4)
P 		776.8
(-1.5)
P 		1219.5
(3)
P 		595
avr 704.8
(-2) 		675.6
(-2.4) 		628.2
(-3) 		824.7
(-0.5) 		758.6
(-1.3) 		1100.6
(3) 		472
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 383.1
(3)
P 		167.9
(-3)
P 		182.9
(-2.6)
P 		195.3
(-2.2)
P 		215
B 318.8
(3)
P 		189
(-2.1)
P 		165.6
(-3)
P 		232.4
(-0.4)
P 		153
C 339.7
(3)
P 		264
(-0.3)
P 		242.4
(-1.2)
P 		200.3
(-3)
P 		139
avr 347.2
(3) 		207
(-2.6) 		197
(-3) 		209.3
(-2.5) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 323
1 2 3 4 5 6 range
A 151.3
(-3)
P 		234.3
(3)
P 		162.4
(-2.2)
P 		216.1
(1.7)
P 		206.2
(1)
P 		224.4
(2.3)
P 		83
B 232.9
(-0.7)
P 		214.2
(-1.1)
P 		109.9
(-3)
P 		221.6
(-0.9)
P 		331.4
(1.1)
P 		432.9
(3)
P 		323
C 231.5
(-1.2)
P 		221.1
(-1.5)
P 		174.8
(-2.6)
P 		158
(-3)
P 		251.4
(-0.8)
P 		408.2
(3)
P 		250
avr 205.2
(-1.4) 		223.2
(-0.8) 		149
(-3) 		198.6
(-1.6) 		263
(0.3) 		355.2
(3) 		206
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186167_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12289
Sequence Type Exemplar sequence
Representative Public ID T05H4.10 NCBI
Target Description T05H4.10 /REP_DB=WormBase Gene ID /WP=CE27439 /TR=O16515 /GB=AAB66016.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072228(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072228 NCBI Caenorhabditis elegans T05H4.10 (T05H4.10) mRNA, complete cds. 11/11 None
SNAP00000040303 ENSEMBL cdna:SNAP chromosome:CEL140:V:6424790:6426749:-1 11/11 None
GENEFINDER00000040323 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6420170:6426749:-1 11/11 None
T05H4.10 ENSEMBL cdna:known chromosome:CEL140:V:6420092:6426749:-1 gene:T05H4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6424789-6426749(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05H4.10
Entrez Gene 179023 Entrez gene
SwissProt O16515 EMBL-EBI
WormBase CE27439 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585908_AT similar to Nucleolar preribosomal-associated protein 1 cfa
CANINE_2:CFA.4795.1.A1_AT similar to Nucleolar preribosomal-associated protein 1 cfa
CANINE_2:CFAAFFX.14034.1.S1_AT similar to Nucleolar preribosomal-associated protein 1 cfa
CHICKEN:GGA.8998.1.S1_AT similar to Protein KIAA0539 gga
CHICKEN:GGAAFFX.21287.1.S1_S_AT similar to Protein KIAA0539 gga
CHICKEN:GGAAFFX.24799.1.S1_S_AT similar to Protein KIAA0539 gga
MG-U74BV2:113706_AT RIKEN cDNA 4921511H13 gene mm
MG-U74BV2:164994_I_AT RIKEN cDNA 4921511H13 gene mm
MOE430B:1453999_AT RIKEN cDNA 4921511H13 gene mm
MOUSE430_2:1453999_AT RIKEN cDNA 4921511H13 gene mm
MOE430B:1454841_AT RIKEN cDNA 4921511H13 gene mm
MOUSE430_2:1454841_AT RIKEN cDNA 4921511H13 gene mm
Protein Similarities
Method ID Description E-Value
blast NP_504629 T05H4.10 [Caenorhabditis elegans] gb|AAB66016.2| Hypothetical protein T05H4.10 [Caenorhabditis elegans] 0.0
blast CAE71874 Hypothetical protein CBG18929 [Caenorhabditis briggsae] 0.0
blast AAB66015 Hypothetical protein T05H4.9 [Caenorhabditis elegans] 0.0
blast AAH73005 LOC443605 protein [Xenopus laevis] 2.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR004906 EMBL-EBI Tc5 transposase 1.0E-126
Pfam IPR007350 EMBL-EBI Tc5 transposase, C-terminal 5.6E-38
Pfam IPR004875 EMBL-EBI CENP-B protein 4.6E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000040323 1 440-462
Sequence
Target Sequence 
>C. ELEGANS:186167_AT
ggattcgattcgtcagtgccgagagtttcaagtatcattactcatttcttcgcaagagtc
tcaaagttaatgttgaatccgtcaagtgatgtttatccgcagatcatggcttttctctgt
atgaaaccaatttttgacattcaaaatgttccagaattttacaaacttctcttctcgtct
tctccagaacaccataatgaagaacgtgaatgggtacttactctgatctccgaggcaatg
ctcgaacccatcgattatcaagttctacaaaaccgagctggtatcaaattgctgctcagt
tcgttctcgagtgtttggctggaacggaaaagtcgttcactgattcttcgaactcttcaa
aatgccgttcaaatgccatctgtggctcatgatcttttcacaagagaaggcctgcacatg
tggattgcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTCGATTCGTCAGTGCCGAGAG 30 509 712 Antisense
AGTATCATTACTCATTTCTTCGCAA 114 63 742 Antisense
TATCCGCAGATCATGGCTTTTCTCT 300 659 805 Antisense
ATTTTACAAACTTCTCTTCTCGTCT 273 15 867 Antisense
GAATGGGTACTTACTCTGATCTCCG 311 331 919 Antisense
GATCTCCGAGGCAATGCTCGAACCC 465 417 936 Antisense
CAAATTGCTGCTCAGTTCGTTCTCG 56 195 996 Antisense
GTCGTTCACTGATTCTTCGAACTCT 515 473 1043 Antisense
AAAATGCCGTTCAAATGCCATCTGT 466 133 1070 Antisense
TGCCATCTGTGGCTCATGATCTTTT 508 585 1085 Antisense
AGGCCTGCACATGTGGATTGCTTCT 677 53 1119 Antisense
Sequence Source Affymetrix Proprietary Database