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[186165_s_at]

Description Y48C3A.18 /REP_DB=WormBase Gene ID /WP=CE22152 /TR=Q9NAF8 /GB=CAB55118.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 68      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_total > 78      4grp_total > 07      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 116.1
(-0.7)
P 		94.8
(-3)
P 		113.1
(-1)
P 		149.8
(3)
P 		55
B 90.3
(-2.8)
P 		94.9
(-1.5)
P 		89.7
(-3)
P 		110.7
(3)
P 		21
C 105.6
(2.1)
P 		83.3
(-3)
P 		109.5
(3)
P 		86
(-2.4)
P 		26
avr 104
(0.2) 		91
(-3) 		104.1
(0.2) 		115.5
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 44.7
(-3)
A 		79.2
(0.3)
P 		63.6
(-1.2)
P 		91.3
(1.4)
P 		69
(-0.7)
P 		107.7
(3)
P 		63
B 76.3
(0.2)
P 		67.7
(-0.4)
P 		50.3
(-1.7)
P 		33.3
(-3)
P 		74.5
(0.1)
P 		113.8
(3)
P 		81
C 58.2
(-1.9)
P 		53.9
(-2.2)
M 		61
(-1.7)
A 		42.2
(-3)
P 		94.4
(0.7)
P 		128
(3)
P 		86
avr 59.7
(-2.6) 		66.9
(-1.9) 		58.3
(-2.7) 		55.6
(-3) 		79.3
(-0.7) 		116.5
(3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 42.3
(3)
P 		20.6
(-3)
P 		29.6
(-0.5)
P 		21.9
(-2.6)
P 		22
B 28.8
(3)
P 		23.4
(-1.1)
P 		20.8
(-3)
P 		23.6
(-0.9)
P 		8
C 34.9
(2.2)
P 		23.9
(-0.6)
P 		38.2
(3)
P 		14.5
(-3)
P 		24
avr 35.3
(3) 		22.6
(-2) 		29.5
(0.7) 		20
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 8.2
(-3)
A 		28.2
(3)
P 		13.9
(-1.3)
P 		23.2
(1.5)
P 		20.8
(0.8)
P 		26.2
(2.4)
P 		20
B 26.6
(0.2)
P 		22.5
(-0.6)
P 		12.2
(-2.4)
P 		8.8
(-3)
P 		30.3
(0.8)
P 		42.4
(3)
P 		34
C 21.6
(-0.7)
P 		16.5
(-1.6)
M 		15.5
(-1.8)
A 		8.5
(-3)
P 		30.6
(0.9)
P 		42.9
(3)
P 		34
avr 18.8
(-1.7) 		22.4
(-0.7) 		13.9
(-2.9) 		13.5
(-3) 		27.2
(0.5) 		37.2
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186165_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2621
Sequence Type Exemplar sequence
Representative Public ID Y48C3A.18 NCBI
Target Description Y48C3A.18 /REP_DB=WormBase Gene ID /WP=CE22152 /TR=Q9NAF8 /GB=CAB55118.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064425(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064425 NCBI Caenorhabditis elegans Y48C3A.18 (Y48C3A.18) mRNA, complete cds. 11/11 A 
GENEFINDER00000006666 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13412545:13414785:1 11/11 None
Y48C3A.18 ENSEMBL cdna:known chromosome:CEL140:II:13412541:13414785:1 gene:Y48C3A.18 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075691 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13412541-13414782(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48C3A.18
Entrez Gene 174981 Entrez gene
SwissProt Q9NAF8 EMBL-EBI
WormBase CE22152 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55118 Hypothetical protein Y48C3A.18 [Caenorhabditis elegans] ref|NP_496826.1| Y48C3A.18 [Caenorhabditis elegans] 1.0E-121
blast CAE73351 Hypothetical protein CBG20783 [Caenorhabditis briggsae] 7.0E-97
blast XP_417757 PREDICTED: similar to YRDC protein [Gallus gallus] 1.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR006070 EMBL-EBI SUA5/yciO/yrdC, N-terminal 5.1E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496826.1 1 220-242
Y48C3A.18 1 220-242
GENEFINDER00000006666 1 220-242
Sequence
Target Sequence 
>C. ELEGANS:186165_S_AT
atcatttccgagatcttcatccgaatatcgatctgatcctcgacgccggatcaatcatct
ccagtggtgaaggatcaacgattgtcgatttgactgttgaatcaggattccggattgttc
gaagtggatgtgctgagaaggagacgatgcagaagcttaaatcattcggattgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCATTTCCGAGATCTTCATCCGAA 672 29 476 Antisense
CATCCGAATATCGATCTGATCCTCG 6 213 493 Antisense
GATCCTCGACGCCGGATCAATCATC 240 417 510 Antisense
GGATCAATCATCTCCAGTGGTGAAG 75 511 523 Antisense
AGTGGTGAAGGATCAACGATTGTCG 160 59 538 Antisense
AACGATTGTCGATTTGACTGTTGAA 294 145 552 Antisense
GAATCAGGATTCCGGATTGTTCGAA 198 327 574 Antisense
GATTCCGGATTGTTCGAAGTGGATG 450 431 581 Antisense
GAAGTGGATGTGCTGAGAAGGAGAC 638 335 596 Antisense
GAAGGAGACGATGCAGAAGCTTAAA 563 333 612 Antisense
GAAGCTTAAATCATTCGGATTGACG 321 341 627 Antisense
Sequence Source Affymetrix Proprietary Database