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[186164_at]

Description Y48C3A.18 /REP_DB=WormBase Gene ID /WP=CE22152 /TR=Q9NAF8 /GB=CAB55118.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 51      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 126.1
(-0.2)
A 		226.1
(3)
A 		137.2
(0.2)
A 		36
(-3)
A 		190
B 124.7
(-0.7)
A 		175.3
(3)
A 		94
(-3)
A 		148.1
(1)
A 		81
C 112.8
(-0.1)
A 		194.2
(3)
A 		148.2
(1.2)
A 		37.9
(-3)
A 		156
avr 121.2
(-0.7) 		198.5
(3) 		126.5
(-0.5) 		74
(-3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 100.7
(2.7)
A 		51.8
(-2.2)
A 		44
(-3)
A 		103.6
(3)
A 		81.9
(0.8)
A 		63.8
(-1)
A 		60
B 117.5
(0.5)
A 		59.7
(-2.1)
A 		38.6
(-3)
A 		107.5
(0.1)
A 		173.6
(3)
A 		136.8
(1.4)
M 		135
C 76
(-0.4)
A 		28.3
(-3)
A 		70.1
(-0.7)
A 		30.1
(-2.9)
A 		109.9
(1.5)
A 		137.8
(3)
A 		110
avr 98.1
(1.1) 		46.6
(-3) 		50.9
(-2.7) 		80.4
(-0.3) 		121.8
(3) 		112.8
(2.3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 45.9
(2.6)
A 		49.1
(3)
A 		35.9
(1.2)
A 		5.3
(-3)
A 		44
B 39.8
(2)
A 		43.3
(3)
A 		21.8
(-3)
A 		31.6
(-0.3)
A 		22
C 37.3
(0.8)
A 		55.8
(3)
A 		51.7
(2.5)
A 		6.4
(-3)
A 		49
avr 41
(1.6) 		49.4
(3) 		36.5
(0.8) 		14.4
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 18.6
(0.2)
A 		18.4
(0.2)
A 		9.6
(-3)
A 		26.3
(3)
A 		24.7
(2.4)
A 		15.5
(-0.9)
A 		17
B 40.9
(0.1)
A 		19.9
(-2)
A 		9.4
(-3)
A 		28.5
(-1.1)
A 		70.5
(3)
A 		51
(1.1)
M 		61
C 28.2
(0.3)
A 		8.6
(-2.6)
A 		17.8
(-1.2)
A 		6.1
(-3)
A 		35.6
(1.4)
A 		46.1
(3)
A 		40
avr 29.2
(0.2) 		15.6
(-2.4) 		12.3
(-3) 		20.3
(-1.5) 		43.6
(3) 		37.5
(1.8) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186164_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2621
Sequence Type Exemplar sequence
Representative Public ID Y48C3A.18 NCBI
Target Description Y48C3A.18 /REP_DB=WormBase Gene ID /WP=CE22152 /TR=Q9NAF8 /GB=CAB55118.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064425(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064425 NCBI Caenorhabditis elegans Y48C3A.18 (Y48C3A.18) mRNA, complete cds. 11/11 A 
GENEFINDER00000006666 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13412545:13414785:1 11/11 None
Y48C3A.18 ENSEMBL cdna:known chromosome:CEL140:II:13412541:13414785:1 gene:Y48C3A.18 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13412541-13414782(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48C3A.18
Entrez Gene 174981 Entrez gene
SwissProt Q9NAF8 EMBL-EBI
WormBase CE22152 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55118 Hypothetical protein Y48C3A.18 [Caenorhabditis elegans] ref|NP_496826.1| Y48C3A.18 [Caenorhabditis elegans] 1.0E-121
blast CAE73351 Hypothetical protein CBG20783 [Caenorhabditis briggsae] 7.0E-97
blast XP_417757 PREDICTED: similar to YRDC protein [Gallus gallus] 1.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR006070 EMBL-EBI SUA5/yciO/yrdC, N-terminal 5.1E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496826.1 1 220-242
Y48C3A.18 1 220-242
GENEFINDER00000006666 1 220-242
Sequence
Target Sequence 
>C. ELEGANS:186164_AT
caccctactacagtactctgacaggctctacgcgttgaaacaacggccgtacgagaagcc
gctcggcatttttctgccgagcccgacggcgatgaagctcgtctcaaggcagacgatttc
cgatgagctagcgaattgcctcctccccggtccagttacattaatgttcgaacgccttcc
atgcctaccggcggaatttaatccgggagttgttaacgtagcctgtcgggttccagactg
cccaattgtttcgacgatatgcaaaaaactcggccaaccgctcgctcaaacatcggccaa
cgtcagtggatcctcactcaacccgacatcaatcgatcatttccgagatcttcatccgaa
tatcgatctgatcctcgacgccggatcaatcatctccagtggtgaaggatcaacgattgt
cgatttgactgttgaatcaggattccggattgttcgaagtggatgtgctgagaaggagac
gatgcagaagcttaaatcattcggattgacgaaaattcagccacccgacgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCCTACTACAGTACTCTGACAGG 163 201 141 Antisense
CTCTGACAGGCTCTACGCGTTGAAA 435 231 156 Antisense
AGCCCGACGGCGATGAAGCTCGTCT 424 81 220 Antisense
GGCAGACGATTTCCGATGAGCTAGC 342 535 248 Antisense
CGATGAGCTAGCGAATTGCCTCCTC 571 247 261 Antisense
TCCCCGGTCCAGTTACATTAATGTT 339 597 284 Antisense
CATTAATGTTCGAACGCCTTCCATG 87 217 299 Antisense
TTAACGTAGCCTGTCGGGTTCCAGA 50 1 353 Antisense
ACTGCCCAATTGTTTCGACGATATG 174 99 377 Antisense
ACATCGGCCAACGTCAGTGGATCCT 47 107 430 Antisense
GACGAAAATTCAGCCACCCGACGTC 272 377 648 Antisense
Sequence Source Affymetrix Proprietary Database