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[186163_at]

Description Y51H7C.2 /REP_DB=WormBase Gene ID /WP=CE25386 /TR=Q9N3I3 /GB=AAK39335.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 25      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.1
(-3)
A 		5.3
(3)
A 		3.6
(-0.2)
A 		4.7
(1.9)
A 		3
B 3.5
(2.5)
A 		2.8
(-1.4)
A 		3.6
(3)
A 		2.5
(-3)
A 		1
C 2.1
(-3)
A 		2.3
(-2.7)
A 		2.9
(-1.8)
A 		6
(3)
A 		4
avr 2.6
(-3) 		3.5
(-0) 		3.4
(-0.3) 		4.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.9
(-1.4)
A 		4.6
(3)
A 		2.3
(-3)
A 		2.4
(-2.7)
A 		3.9
(1.2)
A 		4.2
(2)
A 		2
B 3.3
(-1.3)
A 		2.4
(-3)
A 		3.4
(-1.1)
A 		4.8
(1.6)
A 		3.2
(-1.5)
A 		5.5
(3)
A 		3
C 2.4
(-3)
A 		5.9
(1.7)
A 		2.7
(-2.6)
A 		3.5
(-1.5)
A 		6.9
(3)
A 		2.6
(-2.7)
A 		5
avr 2.9
(-2.7) 		4.3
(1.7) 		2.8
(-3) 		3.6
(-0.5) 		4.7
(3) 		4.1
(1.1) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.8
(-1.8)
A 		1.2
(3)
A 		0.9
(-0.6)
A 		0.7
(-3)
A 		1
B 1.1
(3)
A 		0.7
(-1)
A 		0.8
(0)
A 		0.5
(-3)
A 		1
C 0.7
(-3)
A 		0.7
(-3)
A 		1
(3)
A 		1
(3)
A 		0
avr 0.9
(3) 		0.9
(3) 		0.9
(3) 		0.7
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.6
(3)
A 		0.5
(-3)
A 		0.6
(-2.5)
A 		1.2
(0.8)
A 		1
(-0.3)
A 		1
B 1.1
(-1.6)
A 		0.8
(-3)
A 		0.8
(-3)
A 		1.3
(-0.7)
A 		1.3
(-0.7)
A 		2.1
(3)
A 		1
C 0.9
(-2.2)
A 		1.8
(1.4)
A 		0.7
(-3)
A 		0.7
(-3)
A 		2.2
(3)
A 		0.9
(-2.2)
A 		2
avr 0.8
(-2.3) 		1.4
(1.7) 		0.7
(-3) 		0.9
(-1.7) 		1.6
(3) 		1.3
(1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186163_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4956
Sequence Type Exemplar sequence
Representative Public ID Y51H7C.2 NCBI
Target Description Y51H7C.2 /REP_DB=WormBase Gene ID /WP=CE25386 /TR=Q9N3I3 /GB=AAK39335.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061574(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061574 NCBI Caenorhabditis elegans Y51H7C.2 (Y51H7C.2) mRNA, complete cds. 11/11 None
SNAP00000035531 ENSEMBL cdna:SNAP chromosome:CEL140:II:1445231:1446771:1 10/11 None
GENEFINDER00000035545 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1445231:1446081:1 11/11 None
Y51H7C.2 ENSEMBL cdna:known chromosome:CEL140:II:1445231:1446081:1 gene:Y51H7C.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1445229-1446080(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H7C.2
Entrez Gene 190174 Entrez gene
SwissProt Q9N3I3 EMBL-EBI
WormBase CE25386 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39335 Hypothetical protein Y51H7C.2 [Caenorhabditis elegans] ref|NP_493975.1| Y51H7C.2 [Caenorhabditis elegans] 1.0E-147
blast AAK39335 Hypothetical protein Y51H7C.2 [Caenorhabditis elegans] ref|NP_493975.1| Y51H7C.2 [Caenorhabditis elegans] 1.0E-139
blast CAE58671 Hypothetical protein CBG01844 [Caenorhabditis briggsae] emb|CAE58668.1| Hypothetical protein CBG01837 [Caenorhabditis briggsae] 2.0E-45
blast CAE58667 Hypothetical protein CBG01836 [Caenorhabditis briggsae] 4.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 6.8E-44
Sequence
Target Sequence 
>C. ELEGANS:186163_AT
gacgaagggtctcttacatgcaccggcaactaacataatgaaaatgaagtggaatgtcac
aatagcaacagcagctcaaaaccatgcgaacaaatgtccaaagggtcacgacggtccttt
agagggagtttctggagaatgtatgtggtcaggacatatcaatgcatcaaaaggtgtgaa
tcatctcggagccgtagctgcaaaggcatggagctccgagtacactaagaagggatggga
gacggacgtaatgagcgacgaatttttcaatagtggcgtcgggcatgctataataatgac
ttggtactcgcaagtcaatgtcgggtgtggcgtgaagctttgtcagaaggagggtgatta
tcagttggctatagtcgtttgtaagtattggggcgaaggacagggtaacggtaagattat
gtacgaatcgggaccaacttgctcggcttgtccgcccaacaccacttgcgatcaggccac
cgggctttgtgatagcaagattccggatattccggaaccgatctacaagtatgatgagct
ggtcaatagtaagccggcctacacggtggttatgggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAAGGGTCTCTTACATGCACCG 659 379 144 Antisense
ATGTCCAAAGGGTCACGACGGTCCT 112 41 237 Antisense
GAATCATCTCGGAGCCGTAGCTGCA 78 329 321 Antisense
AAGGCATGGAGCTCCGAGTACACTA 132 161 346 Antisense
TAGTGGCGTCGGGCATGCTATAATA 334 653 414 Antisense
GTACTCGCAAGTCAATGTCGGGTGT 467 457 447 Antisense
GGGTGTGGCGTGAAGCTTTGTCAGA 102 499 466 Antisense
ATGTACGAATCGGGACCAACTTGCT 523 45 562 Antisense
ATTCCGGAACCGATCTACAAGTATG 632 3 652 Antisense
GCTGGTCAATAGTAAGCCGGCCTAC 217 291 681 Antisense
GCCGGCCTACACGGTGGTTATGGGC 442 281 696 Antisense
Sequence Source Affymetrix Proprietary Database