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[186161_at]

Description C16C4.16 /REP_DB=WormBase Gene ID /WP=CE08212 /TR=O16554 /GB=AAB93660.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 1.2
(-3)
A 		9.3
(-0.7)
A 		22.5
(3)
P 		4.2
(-2.2)
A 		21
B 11.1
(-0.9)
A 		25.3
(3)
A 		3.5
(-3)
A 		13.2
(-0.3)
A 		22
C 0.6
(-3)
A 		10
(-1.5)
A 		16.1
(-0.5)
A 		37.3
(3)
P 		37
avr 4.3
(-3) 		14.9
(1.6) 		14
(1.2) 		18.2
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 30
(3)
A 		2.7
(-3)
A 		13.2
(-0.7)
A 		23.7
(1.6)
A 		10.8
(-1.2)
A 		3.6
(-2.8)
A 		27
B 29.9
(1)
A 		6.5
(-2.5)
A 		43.6
(3)
A 		5.6
(-2.6)
A 		2.9
(-3)
A 		8.7
(-2.1)
A 		41
C 19.5
(-0.3)
A 		10
(-1.9)
A 		21.3
(0)
A 		38.5
(3)
A 		19.2
(-0.3)
A 		3.6
(-3)
A 		35
avr 26.5
(3) 		6.4
(-2.7) 		26
(2.9) 		22.6
(1.9) 		11
(-1.4) 		5.3
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.4
(-3)
A 		2
(-1.3)
A 		5.9
(3)
P 		0.6
(-2.8)
A 		6
B 3.5
(-0)
A 		6.2
(3)
A 		0.8
(-3)
A 		2.8
(-0.8)
A 		5
C 0.2
(-3)
A 		2.9
(-0.3)
A 		5.6
(2.3)
A 		6.3
(3)
P 		6
avr 1.4
(-3) 		3.7
(2.1) 		4.1
(3) 		3.2
(1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 5.5
(2.4)
A 		1
(-2.9)
A 		2.9
(-0.6)
A 		6
(3)
A 		3.3
(-0.2)
A 		0.9
(-3)
A 		5
B 10.4
(2.9)
A 		2.2
(-2.4)
A 		10.6
(3)
A 		1.5
(-2.8)
A 		1.2
(-3)
A 		3.2
(-1.7)
A 		9
C 7.2
(2.5)
A 		3.1
(-1.3)
A 		5.4
(0.8)
A 		7.8
(3)
A 		6.2
(1.5)
A 		1.2
(-3)
A 		7
avr 7.7
(3) 		2.1
(-2.7) 		6.3
(1.6) 		5.1
(0.4) 		3.6
(-1.2) 		1.8
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186161_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5409
Sequence Type Exemplar sequence
Representative Public ID C16C4.16 NCBI
Target Description C16C4.16 /REP_DB=WormBase Gene ID /WP=CE08212 /TR=O16554 /GB=AAB93660.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061703(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061703 NCBI Caenorhabditis elegans C16C4.16 (C16C4.16) mRNA, complete cds. 11/11 None
SNAP00000026900 ENSEMBL cdna:SNAP chromosome:CEL140:II:1871550:1875001:1 10/11 None
GENEFINDER00000026917 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1871550:1877239:1 10/11 None
C16C4.16 ENSEMBL cdna:known chromosome:CEL140:II:1874278:1875108:1 gene:C16C4.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1874276-1875107(+) 97.37 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C4.16
Entrez Gene 182670 Entrez gene
SwissProt O16554 EMBL-EBI
WormBase CE08212 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93659 Hypothetical protein C16C4.15 [Caenorhabditis elegans] ref|NP_494103.1| C16C4.15 [Caenorhabditis elegans] 1.0E-160
blast AAB93659 Hypothetical protein C16C4.15 [Caenorhabditis elegans] ref|NP_494103.1| C16C4.15 [Caenorhabditis elegans] 1.0E-157
blast AAF60435 Hypothetical protein Y16E11A.1 [Caenorhabditis elegans] ref|NP_494144.2| Y16E11A.1 [Caenorhabditis elegans] 1.0E-115
blast AAB93661 Hypothetical protein C16C4.4 [Caenorhabditis elegans] ref|NP_494102.2| C16C4.4 [Caenorhabditis elegans] 1.0E-108
blast AAB93661 Hypothetical protein C16C4.4 [Caenorhabditis elegans] ref|NP_494102.2| C16C4.4 [Caenorhabditis elegans] 1.0E-106
blast AAB93650 Hypothetical protein C16C4.3 [Caenorhabditis elegans] ref|NP_494105.1| C16C4.3 [Caenorhabditis elegans] 3.0E-95
blast AAB93660 Hypothetical protein C16C4.16 [Caenorhabditis elegans] ref|NP_494104.1| C16C4.16 [Caenorhabditis elegans] 8.0E-94
blast AAB93649 Hypothetical protein C16C4.2 [Caenorhabditis elegans] ref|NP_494113.2| C16C4.2 [Caenorhabditis elegans] 1.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.6E-51
Pfam IPR002083 EMBL-EBI MATH 9.0E-34
Pfam IPR002083 EMBL-EBI MATH 1.5E-47
Pfam IPR002083 EMBL-EBI MATH 7.4E-26
Pfam IPR002083 EMBL-EBI MATH 4.6E-51
Pfam IPR002083 EMBL-EBI MATH 6.1E-11
Pfam IPR002083 EMBL-EBI MATH 4.6E-51
Pfam IPR002083 EMBL-EBI MATH 7.1E-52
Pfam IPR002083 EMBL-EBI MATH 1.6E-47
Sequence
Target Sequence 
>C. ELEGANS:186161_AT
gttgccagattccccatgcaatagagacgagaatcagaaaatatttctgctgaatcacac
tgttaaacatatttcgagcattaaagaaggagacgactactacacaaaaatagaaaaacg
atacaatattccatggaaattggggattcatcgaagtaatgggttttttggattattcat
atattgtgacaaaaaactttccgaaaccagaccatggggaatcaaagttgaggacactct
taaattagtgtctgtaaatggccagagcttatctttcaatggaacacctactttcaaaga
gccaactggttttggattttcgaagtttataagatgggatgacatggaggagaagtacgt
ggtgaatgacagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCCAGATTCCCCATGCAATAGA 707 439 18 Antisense
GATTCCCCATGCAATAGAGACGAGA 549 433 25 Antisense
CACTGTTAAACATATTTCGAGCATT 522 197 75 Antisense
GAAGGAGACGACTACTACACAAAAA 625 333 103 Antisense
GGGGATTCATCGAAGTAATGGGTTT 184 499 159 Antisense
TCCGAAACCAGACCATGGGGAATCA 572 555 217 Antisense
GAATCAAAGTTGAGGACACTCTTAA 158 327 236 Antisense
GAGCTTATCTTTCAATGGAACACCT 588 387 282 Antisense
GGAACACCTACTTTCAAAGAGCCAA 207 529 298 Antisense
GAGCCAACTGGTTTTGGATTTTCGA 157 385 316 Antisense
GGAGAAGTACGTGGTGAATGACAGT 26 519 366 Antisense
Sequence Source Affymetrix Proprietary Database