[Home] | [Total List]

[186159_at]

Description F41H10.5 /REP_DB=WormBase Gene ID /WP=CE10280 /TR=Q20297 /GB=AAK29804.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 38      6grp_total > 27      4grp_total > 38      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 191
(3)
P 		115.7
(-0.7)
M 		70.5
(-3)
A 		124.9
(-0.3)
A 		121
B 171.1
(3)
P 		127.5
(0)
P 		83.2
(-3)
P 		127.1
(-0)
A 		88
C 190.7
(3)
P 		133.7
(0.1)
M 		71.2
(-3)
P 		140.4
(0.5)
A 		120
avr 184.3
(3) 		125.6
(-0.2) 		75
(-3) 		130.8
(0.1) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 265.7
(3)
P 		158
(-0.7)
P 		115.5
(-2.1)
P 		89
(-3)
P 		110.8
(-2.3)
P 		126.4
(-1.7)
P 		177
B 244.4
(3)
P 		157.3
(-0.1)
P 		113
(-1.7)
P 		105
(-2)
P 		77.9
(-3)
P 		156.5
(-0.2)
P 		167
C 221.5
(3)
P 		125.9
(-0.3)
P 		96.7
(-1.3)
P 		47.4
(-3)
A 		76.2
(-2)
A 		183.3
(1.7)
P 		174
avr 243.9
(3) 		147.1
(-0.6) 		108.4
(-2) 		80.5
(-3) 		88.3
(-2.7) 		155.4
(-0.2) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 69.5
(3)
P 		25.1
(-2.2)
M 		18.4
(-3)
A 		18.3
(-3)
A 		51
B 54.6
(3)
P 		31.5
(-0.9)
P 		19.3
(-3)
P 		27.1
(-1.7)
A 		35
C 63.1
(3)
P 		38.5
(-0.7)
M 		24.8
(-2.8)
P 		23.7
(-3)
A 		39
avr 62.4
(3) 		31.7
(-1.4) 		20.8
(-3) 		23
(-2.7) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 49
(1.7)
P 		56.2
(3)
P 		25.2
(-2.5)
P 		22.6
(-3)
P 		33.4
(-1.1)
P 		30.8
(-1.5)
P 		34
B 85
(3)
P 		52.4
(-0.4)
P 		27.4
(-3)
P 		27.8
(-3)
P 		31.7
(-2.6)
P 		58.4
(0.2)
P 		58
C 82.1
(3)
P 		38.4
(-0.6)
P 		24.6
(-1.8)
P 		9.5
(-3)
A 		24.7
(-1.7)
A 		61.3
(1.3)
P 		73
avr 72
(3) 		49
(0.3) 		25.7
(-2.3) 		20
(-3) 		29.9
(-1.9) 		50.2
(0.5) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186159_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10728
Sequence Type Exemplar sequence
Representative Public ID F41H10.5 NCBI
Target Description F41H10.5 /REP_DB=WormBase Gene ID /WP=CE10280 /TR=Q20297 /GB=AAK29804.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068388(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068388 NCBI Caenorhabditis elegans F41H10.5 (F41H10.5) mRNA, complete cds. 11/11 None
SNAP00000003904 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5361119:5362065:1 11/11 None
GENEFINDER00000003919 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5361002:5362065:1 11/11 None
F41H10.5 ENSEMBL cdna:known chromosome:CEL140:IV:5361002:5362065:1 gene:F41H10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5361007-5362071(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41H10.5
Entrez Gene 185643 Entrez gene
SwissProt Q20297 EMBL-EBI
WormBase CE10280 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29804 Hypothetical protein F41H10.5 [Caenorhabditis elegans] ref|NP_500789.1| F41H10.5 [Caenorhabditis elegans] 1.0E-161
blast AAK29804 Hypothetical protein F41H10.5 [Caenorhabditis elegans] ref|NP_500789.1| F41H10.5 [Caenorhabditis elegans] 1.0E-139
blast CAE72723 Hypothetical protein CBG19960 [Caenorhabditis briggsae] 1.0E-133
blast CAE72723 Hypothetical protein CBG19960 [Caenorhabditis briggsae] 1.0E-120
blast CAB03202 Hypothetical protein M02B1.3 [Caenorhabditis elegans] ref|NP_502445.1| M02B1.3 [Caenorhabditis elegans] 5.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500789.1 5 20-38,59-81,96-113,190-212,222-244
F41H10.5 5 20-38,59-81,96-113,190-212,222-244
SNAP00000003904 4 20-42,57-74,151-173,183-205
GENEFINDER00000003919 5 20-38,59-81,96-113,190-212,222-244
Sequence
Target Sequence 
>C. ELEGANS:186159_AT
gacgtcatcgactggtacaatcccattgccgctcagctcccattgatctcggtcgcctat
ttctttcaagacgcctttgacatgctgatgtatgaatggaatagctatacattggagctg
ctgcttcatcattttgcaacgtgtgccgcattggtggctcccgggctgactggaaagttc
acactggcagccggatgggctttgttgatggaggtcaacagcatcttccttcacgcccga
acaattcttcaaatctgtggcctttccacccaatttcctggagtattccgtgttgtcgtc
tactcaaatatcatcagcttcttcttcttccgtatcgtctctcaaattctctggacaaac
tgggcaatttacaatgttcctggtcttcattggtattatgtgcttgtcggattgggtgga
cccatcatatttggttgtatcaatggaatgttgttcttgagacttcttgcttctgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTCATCGACTGGTACAATCCCA 216 377 286 Antisense
TCGGTCGCCTATTTCTTTCAAGACG 608 605 334 Antisense
GCTGCTGCTTCATCATTTTGCAACG 278 297 402 Antisense
TGCAACGTGTGCCGCATTGGTGGCT 358 575 420 Antisense
GCTCCCGGGCTGACTGGAAAGTTCA 207 299 442 Antisense
AGTTCACACTGGCAGCCGGATGGGC 639 63 461 Antisense
TGGAGGTCAACAGCATCTTCCTTCA 96 551 494 Antisense
TTCTTCAAATCTGTGGCCTTTCCAC 312 689 530 Antisense
ATTCCGTGTTGTCGTCTACTCAAAT 127 9 570 Antisense
GTATCGTCTCTCAAATTCTCTGGAC 303 455 617 Antisense
GTTCTTGAGACTTCTTGCTTCTGAC 663 443 738 Antisense
Sequence Source Affymetrix Proprietary Database