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[186158_at]

Description F16H11.1 /REP_DB=WormBase Gene ID /WP=CE04396 /TR=Q19498 /GB=AAA98007.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 71      6grp_total > 50      4grp_total > 58      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 257
1 2 3 4 range
A 262
(-3)
P 		314.5
(-0.7)
P 		396.7
(3)
P 		269
(-2.7)
P 		135
B 305
(0.7)
P 		345.9
(1.7)
P 		402.7
(3)
P 		145.4
(-3)
P 		257
C 275.2
(0.2)
P 		322.7
(2.2)
P 		340.3
(3)
P 		199.6
(-3)
P 		141
avr 280.7
(-0.4) 		327.7
(1.2) 		379.9
(3) 		204.7
(-3) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 336.1
(-1.3)
P 		369.3
(-0.3)
P 		414.6
(1.2)
P 		471.9
(3)
P 		314.9
(-2)
P 		283.9
(-3)
P 		188
B 424.6
(3)
P 		307.8
(-1.9)
P 		313.5
(-1.6)
P 		421.5
(2.9)
P 		310.9
(-1.7)
P 		280.8
(-3)
P 		144
C 417.3
(3)
P 		364.5
(0.5)
P 		337.8
(-0.7)
P 		395.8
(2)
P 		289.9
(-3)
P 		316.2
(-1.8)
P 		127
avr 392.7
(1.4) 		347.2
(-0.6) 		355.3
(-0.3) 		429.7
(3) 		305.2
(-2.5) 		293.6
(-3) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 95.4
(2.2)
P 		68.3
(-0.3)
P 		103.7
(3)
P 		39.4
(-3)
P 		64
B 97.3
(3)
P 		85.4
(1.9)
P 		93.3
(2.6)
P 		31
(-3)
P 		66
C 91.1
(1.1)
P 		92.8
(1.2)
P 		118.6
(3)
P 		33.7
(-3)
P 		85
avr 94.6
(2.1) 		82.2
(1) 		105.2
(3) 		34.7
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 62
(-3)
P 		131.3
(3)
P 		90.3
(-0.5)
P 		119.7
(2)
P 		95
(-0.1)
P 		69.1
(-2.4)
P 		69
B 147.7
(3)
P 		102.5
(-0.8)
P 		76.1
(-3)
P 		111.6
(-0)
P 		126.3
(1.2)
P 		104.7
(-0.6)
P 		72
C 154.7
(3)
P 		111.2
(-0.5)
P 		86
(-2.5)
P 		79.6
(-3)
P 		93.8
(-1.9)
P 		105.9
(-0.9)
P 		75
avr 121.5
(3) 		115
(2) 		84.1
(-3) 		103.6
(0.1) 		105
(0.4) 		93.2
(-1.5) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186158_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16713
Sequence Type Exemplar sequence
Representative Public ID F16H11.1 NCBI
Target Description F16H11.1 /REP_DB=WormBase Gene ID /WP=CE04396 /TR=Q19498 /GB=AAA98007.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076398(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076398 NCBI Caenorhabditis elegans F16H11.1 (F16H11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000010354 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4668060:4673033:1 11/11 None
F16H11.1 ENSEMBL cdna:known chromosome:CEL140:X:4668059:4673182:1 gene:F16H11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010350 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4668060-4673034(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16H11.1
Entrez Gene 180739 Entrez gene
SwissProt Q19498 EMBL-EBI
WormBase CE04396 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251453_AT lactose permease-related at
CANINE_2:CFA.17353.1.S1_AT similar to F16H11.1 cfa
CANINE_2:CFAAFFX.29322.1.S1_S_AT similar to F16H11.1 cfa
CHICKEN:GGA.7144.1.S1_AT similar to C19orf28 protein gga
HG-U133_PLUS_2:220178_AT chromosome 19 open reading frame 28 hs
HG-U133A:220178_AT chromosome 19 open reading frame 28 hs
HG-U133A_2:220178_AT chromosome 19 open reading frame 28 hs
HU35KSUBA:RC_AA417588_AT chromosome 19 open reading frame 28 hs
U133_X3P:G11119425_3P_AT chromosome 19 open reading frame 28 hs
U133_X3P:HS.301406.1.S1_3P_AT chromosome 19 open reading frame 28 hs
HG-U133_PLUS_2:226516_AT chromosome 19 open reading frame 28 hs
HG-U133B:226516_AT chromosome 19 open reading frame 28 hs
HG-U95E:89776_AT chromosome 19 open reading frame 28 hs
HG-U95C:61893_AT Chromosome 19 open reading frame 28 hs
HU35KSUBC:RC_N50101_AT Chromosome 19 open reading frame 28 hs
MG-U74BV2:114501_AT RIKEN cDNA 4930404N11 gene mm
MOE430B:1431368_AT RIKEN cDNA 4930404N11 gene mm
MOUSE430_2:1431368_AT RIKEN cDNA 4930404N11 gene mm
MOE430B:1432131_AT RIKEN cDNA 4930404N11 gene mm
MOUSE430_2:1432131_AT RIKEN cDNA 4930404N11 gene mm
MOE430B:1456443_AT RIKEN cDNA 4930404N11 gene mm
MOUSE430_2:1456443_AT RIKEN cDNA 4930404N11 gene mm
RAE230A:1385137_AT similar to hypothetical protein MGC20700 (predicted) rn
RAT230_2:1385137_AT similar to hypothetical protein MGC20700 (predicted) rn
RG-U34A:RC_AA858603_AT similar to hypothetical protein MGC20700 (predicted) rn
RG-U34A:RC_AA858603_G_AT similar to hypothetical protein MGC20700 (predicted) rn
RG-U34A:RC_AA893869_G_AT similar to hypothetical protein MGC20700 (predicted) rn
RG-U34A:RC_AA893869_AT similar to hypothetical protein MGC20700 (predicted) rn
RG-U34C:RC_AI102743_AT similar to hypothetical protein MGC20700 (predicted) rn
RAE230A:1374670_AT similar to hypothetical protein MGC20700 (predicted) rn
RAT230_2:1374670_AT similar to hypothetical protein MGC20700 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA98007 Hypothetical protein F16H11.1 [Caenorhabditis elegans] ref|NP_508799.1| F16H11.1 [Caenorhabditis elegans] 0.0
blast CAE68630 Hypothetical protein CBG14518 [Caenorhabditis briggsae] 0.0
blast XP_690452 PREDICTED: similar to sugar transport protein like (56.8 kD) (XF291) [Danio rerio] 1.0E-88
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508799.1 11 38-60,113-130,145-167,188-207,222-244,286-308,318-340,347-365,370-392,405-427,450-472
F16H11.1 11 38-60,113-130,145-167,188-207,222-244,286-308,318-340,347-365,370-392,405-427,450-472
GENEFINDER00000010354 11 38-60,113-130,145-167,188-207,222-244,286-308,318-340,347-365,370-392,405-427,450-472
Sequence
Target Sequence 
>C. ELEGANS:186158_AT
gcaagtctatttcccattctatattacaatgacacaaaactatgaaaaaaaatatgtagc
aattttaccaatggtggcatatctctcatcgttttccgtatcaatggtaaacagcctacc
tgttgtgagcaaactttccaaaaaaatactgtatagtttcggattggcatccggtatgct
atcatgtgctgtcatgatgcttgacttaccaggatggaaaatttacgcactggctgttgg
aattggaatcgcacaggcaatattattgataacctcactgtcaatcacggctgatctgat
aaacaagaatacagaaagtggagcatttgtttacggagcaatgagctttttcgacaaact
ttcaaacggaatcgcttatcagctgatcgaattatggactcccgcttatgacgcgctcaa
accacacgaagtaagcgcgattttttatcgacgagtgatggtattcgtacccggaacatg
tctggtccttgcgtttttggttctcttatcgctggcaccatttaaaataggggagaggag
acgtgcacgtcctgaagatgaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGTCTATTTCCCATTCTATATT 333 321 906 Antisense
TACCAATGGTGGCATATCTCTCATC 316 651 971 Antisense
ATCTCTCATCGTTTTCCGTATCAAT 324 33 986 Antisense
ACAGCCTACCTGTTGTGAGCAAACT 365 109 1016 Antisense
GCATCCGGTATGCTATCATGTGCTG 550 309 1072 Antisense
TGATAACCTCACTGTCAATCACGGC 618 561 1172 Antisense
GCTGATCGAATTATGGACTCCCGCT 576 295 1287 Antisense
TTCGTACCCGGAACATGTCTGGTCC 699 685 1369 Antisense
TCCTTGCGTTTTTGGTTCTCTTATC 629 591 1391 Antisense
TTCTCTTATCGCTGGCACCATTTAA 597 691 1406 Antisense
GACGTGCACGTCCTGAAGATGAACA 426 377 1445 Antisense
Sequence Source Affymetrix Proprietary Database