[Home] | [Total List]

[186157_at]

Description E02C12.4 /REP_DB=WormBase Gene ID /WP=CE04313 /TR=Q19028 /GB=AAA83461.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      4grp_highest_8_8 > 07      4grp_high_8_8 > 14      6grp_highest_nonorm > 90      6grp_total > 73      4grp_total > 10      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 43.8
(-3)
P 		71.7
(-2)
P 		60.8
(-2.4)
P 		215.6
(3)
P 		172
B 44.3
(-3)
P 		82.5
(-1.3)
P 		51.8
(-2.7)
P 		181.7
(3)
P 		137
C 57.9
(-3)
P 		82.1
(-1.8)
P 		75.6
(-2.1)
P 		174.8
(3)
P 		117
avr 48.7
(-3) 		78.8
(-1.7) 		62.7
(-2.4) 		190.7
(3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 49.8
(-3)
P 		70.5
(-1.6)
P 		141.4
(3)
P 		118.3
(1.5)
P 		86.4
(-0.6)
P 		72
(-1.5)
P 		92
B 49
(-3)
P 		79.1
(-0.8)
P 		113.1
(1.7)
P 		86.3
(-0.3)
P 		130.9
(3)
P 		96.1
(0.5)
P 		82
C 68.8
(-3)
P 		99
(1.4)
P 		69.5
(-2.9)
P 		109.9
(3)
P 		95.9
(1)
P 		79
(-1.5)
P 		41
avr 55.9
(-3) 		82.9
(0.1) 		108
(3) 		104.8
(2.6) 		104.4
(2.6) 		82.4
(0.1) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 15.9
(-2.9)
P 		15.6
(-3)
P 		15.9
(-2.9)
P 		31.6
(3)
P 		16
B 14.1
(-2.5)
P 		20.4
(-1.1)
P 		12
(-3)
P 		38.7
(3)
P 		27
C 19.2
(-3)
P 		23.6
(-0.4)
P 		26.4
(1.2)
P 		29.5
(3)
P 		10
avr 16.4
(-3) 		19.9
(-1.8) 		18.1
(-2.4) 		33.3
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 9.2
(-3)
P 		25.1
(1.4)
P 		30.8
(3)
P 		30
(2.8)
P 		26.1
(1.7)
P 		17.5
(-0.7)
P 		22
B 17
(-3)
P 		26.3
(-1.5)
P 		27.5
(-1.3)
P 		22.8
(-2)
P 		53.2
(3)
P 		35.8
(0.1)
P 		36
C 25.5
(0.5)
P 		30.2
(2.6)
P 		17.7
(-3)
P 		22.1
(-1)
P 		31
(3)
P 		26.5
(1)
P 		13
avr 17.2
(-3) 		27.2
(0.1) 		25.3
(-0.5) 		25
(-0.6) 		36.8
(3) 		26.6
(-0.1) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186157_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12313
Sequence Type Exemplar sequence
Representative Public ID E02C12.4 NCBI
Target Description E02C12.4 /REP_DB=WormBase Gene ID /WP=CE04313 /TR=Q19028 /GB=AAA83461.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028590
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000032020 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9357153:9362334:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073023 6/11 Cross Hyb Matching Probes None
NM_001028590 3/11 Cross Hyb Matching Probes None
SNAP00000032002 6/11 Cross Hyb Matching Probes None
SNAP00000032003 3/11 Cross Hyb Matching Probes None
E02C12.4 6/11 Cross Hyb Matching Probes None
E02C12.13 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9357309-9359089(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83462 G protein, alpha subunit protein 3 [Caenorhabditis elegans] ref|NP_505425.1| G Protein, Alpha subunit family member (gpa-3) [Caenorhabditis elegans] gb|AAG32079.1| heterotrimeric G protein alpha subunit [Caenorhabditis elegans] sp|P28052|GPA3_CAEEL Guanine nucleotide-binding protein alpha-3 subunit 0.0
blast AAA28061 G protein alpha subunit 0.0
blast AAW02902 gpa-3 [Caenorhabditis briggsae] sp|Q60W52|GPA3_CAEBR Guanine nucleotide-binding protein alpha-3 subunit emb|CAE72163.1| Hypothetical protein CBG19263 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001019 EMBL-EBI Guanine nucleotide binding protein (G-protein), alpha subunit 1.0E-126
Pfam IPR001534 EMBL-EBI Transthyretin-like 5.7E-46
Pfam IPR001534 EMBL-EBI Transthyretin-like 2.8E-54
Sequence
Target Sequence 
>C. ELEGANS:186157_AT
tctggaaacacttttgatttgggagaattcaatttagaaactagagtgaagcacaatgaa
gaacgacaaaaacatgtggataagttgagaattcgtcgagaacattggaagaagatccgg
aatttgagaaacgtcgaaattgaaaaaataactacaaaaaatgtttttaaaggaagagat
gaagaaccagacgatagaaatgatccatggtatgttccgctgaacataaaacatttgtat
cttacggtttcaatttggaaacaagttataaacataaatgattatcagtatgattacatt
atttattgtttagtacaaatgaactattgttttgcatcgataattgtaatttcacttgga
tattctcttgcattccgtcttcaaggtgtagcagtcaaagggaaattggcatgtggagat
aagccttggaagaatgcaaaaataaagttatacgacattgatacaaatcaaggtgatgca
gatgatcttctcgatgagaagtatactgataaagacggagaatttcgagttgatggaaca
acacgtgaactgacaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGGAAACACTTTTGATTTGGGAG 295 605 325 Antisense
GGATAAGTTGAGAATTCGTCGAGAA 161 511 402 Antisense
GAAGATCCGGAATTTGAGAAACGTC 621 337 435 Antisense
TGATCCATGGTATGTTCCGCTGAAC 349 565 525 Antisense
AACATTTGTATCTTACGGTTTCAAT 688 137 554 Antisense
GAACTATTGTTTTGCATCGATAATT 125 351 645 Antisense
ATTTCACTTGGATATTCTCTTGCAT 7 17 673 Antisense
TTGGATATTCTCTTGCATTCCGTCT 167 709 680 Antisense
TCCGTCTTCAAGGTGTAGCAGTCAA 216 595 698 Antisense
GGTGATGCAGATGATCTTCTCGATG 268 501 796 Antisense
GGAACAACACGTGAACTGACACCAA 155 529 859 Antisense
Sequence Source Affymetrix Proprietary Database