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[186156_at] 7TM chemoreceptor, srv family

Description T13A10.9 /REP_DB=WormBase Gene ID /WP=CE07490 /TR=Q22447 /GB=AAB38124.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 31      6grp_total > 12      4grp_total > 05      6grp_cgc > 25      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 71.3
(-1.5)
P 		47.1
(-3)
A 		70.1
(-1.6)
A 		143.9
(3)
P 		97
B 86.7
(0.6)
P 		56.9
(-2.3)
A 		49.9
(-3)
A 		111
(3)
A 		61
C 97
(-0.3)
P 		50.9
(-2.7)
A 		45
(-3)
A 		162.4
(3)
P 		117
avr 85
(-0.7) 		51.6
(-3) 		55
(-2.8) 		139.1
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 63.7
(-0.8)
P 		87.7
(2)
P 		95.9
(3)
P 		60.1
(-1.3)
A 		54.7
(-1.9)
P 		45.7
(-3)
A 		50
B 75.9
(3)
P 		46
(-0.5)
P 		23.9
(-3)
A 		49.1
(-0.1)
P 		42.9
(-0.8)
P 		58.1
(0.9)
P 		52
C 49.4
(-0.7)
M 		99.4
(3)
P 		41.6
(-1.3)
A 		73.9
(1.1)
P 		17.8
(-3)
A 		50
(-0.6)
P 		82
avr 63
(0.8) 		77.7
(3) 		53.8
(-0.7) 		61
(0.4) 		38.5
(-3) 		51.3
(-1) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 26
(3)
P 		10.2
(-3)
A 		18.3
(0.1)
A 		21.1
(1.1)
P 		16
B 27.7
(3)
P 		14
(-2.1)
A 		11.6
(-3)
A 		23.6
(1.5)
A 		16
C 32.1
(3)
P 		14.6
(-3)
A 		15.7
(-2.6)
A 		27.4
(1.4)
P 		18
avr 28.6
(3) 		12.9
(-3) 		15.2
(-2.1) 		24
(1.2) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 11.7
(-2.8)
P 		31.2
(3)
P 		20.9
(-0.1)
P 		15.2
(-1.8)
A 		16.5
(-1.4)
P 		11.1
(-3)
A 		20
B 26.4
(3)
P 		15.3
(-0.2)
P 		5.8
(-3)
A 		13
(-0.9)
P 		17.4
(0.4)
P 		21.7
(1.6)
P 		21
C 18.3
(0.1)
M 		30.3
(3)
P 		10.6
(-1.8)
A 		14.9
(-0.8)
P 		5.8
(-3)
A 		16.7
(-0.3)
P 		25
avr 18.8
(-0.1) 		25.6
(3) 		12.4
(-3) 		14.4
(-2.1) 		13.2
(-2.6) 		16.5
(-1.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186156_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10807
Sequence Type Exemplar sequence
Representative Public ID T13A10.9 NCBI
Target Description T13A10.9 /REP_DB=WormBase Gene ID /WP=CE07490 /TR=Q22447 /GB=AAB38124.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068550(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068550 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-31) (srv-31) mRNA, complete cds. 11/11 None
SNAP00000039093 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6270299:6272007:-1 10/11 None
GENEFINDER00000039099 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6269738:6272007:-1 10/11 None
T13A10.9 ENSEMBL cdna:known chromosome:CEL140:IV:6269757:6272007:-1 gene:T13A10.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068548 1/11 Cross Hyb Matching Probes None
GENEFINDER00000039102 1/11 Cross Hyb Matching Probes None
T13A10.7 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6270874-6272013(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srv family
Gene Symbol srv-31
Ensembl T13A10.9
Entrez Gene 188463 Entrez gene
SwissProt Q22446 EMBL-EBI
WormBase CE38107 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500951 Serpentine Receptor, class V family member (srv-31) [Caenorhabditis elegans] gb|AAB38123.3| Serpentine receptor, class v protein 31 [Caenorhabditis elegans] 0.0
blast NP_500951 Serpentine Receptor, class V family member (srv-31) [Caenorhabditis elegans] gb|AAB38123.3| Serpentine receptor, class v protein 31 [Caenorhabditis elegans] 1.0E-179
blast NP_500949 Serpentine Receptor, class V family member (srv-30) [Caenorhabditis elegans] gb|AAB38122.3| Serpentine receptor, class v protein 30 [Caenorhabditis elegans] 1.0E-150
blast NP_500949 Serpentine Receptor, class V family member (srv-30) [Caenorhabditis elegans] gb|AAB38122.3| Serpentine receptor, class v protein 30 [Caenorhabditis elegans] 1.0E-143
blast T16853 hypothetical protein T13A10.9 - Caenorhabditis elegans 1.0E-120
blast NP_500951 Serpentine Receptor, class V family member (srv-31) [Caenorhabditis elegans] gb|AAB38123.3| Serpentine receptor, class v protein 31 [Caenorhabditis elegans] 1.0E-120
blast T16853 hypothetical protein T13A10.9 - Caenorhabditis elegans 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.2E-116
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500951.2 7 9-31,44-66,86-108,129-151,180-202,218-240,255-277
T13A10.9 7 9-31,44-66,86-108,129-151,180-202,218-240,255-277
SNAP00000039093 5 20-42,62-84,104-125,154-176,196-218
GENEFINDER00000039099 8 9-31,44-66,86-108,129-151,186-208,229-251,266-288,349-371
Sequence
Target Sequence 
>C. ELEGANS:186156_AT
tggccgatattccttttctatggaatttcaattccaagtcttccactgtatattatggta
cttatatgtcttataaaattgagattccactcaaaaacatatcaatcaacgttttatact
attctcatgcaacattcaattgctgatatttgcatcatgatattctacacaactacatgg
ggacttcgcacaaaacccggcatcagagaaatgctgtacacctaccaacatttttacgtt
gcggctgccctctataattcaatatattacacattgtatattcgatgtactggaattgta
tttctatctcttcatcgttttcttgtcatttctggacctactcaccgtttgactctgatg
gttcaagaggctgccacatggaaagttgtagcagtttattggatttttcccactttgatt
agtctaatagttctgaaagatacagatgtttattacaattcaatggaagagttggaatat
gtcgtgccaaagaatattctatcgcgtaataccttgatggcactgatagttctgtcatcc
acttgtctaatttgtgtagtatgctacattgccttgtggttcatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCCGATATTCCTTTTCTATGGAA 416 543 31 Antisense
CAATTCCAAGTCTTCCACTGTATAT 500 179 59 Antisense
TTATACTATTCTCATGCAACATTCA 224 679 144 Antisense
TCTACACAACTACATGGGGACTTCG 261 595 194 Antisense
TTCGCACAAAACCCGGCATCAGAGA 159 697 215 Antisense
ATGCTGTACACCTACCAACATTTTT 214 41 241 Antisense
CAACATTTTTACGTTGCGGCTGCCC 428 189 256 Antisense
ATCGCGTAATACCTTGATGGCACTG 371 37 531 Antisense
GGCACTGATAGTTCTGTCATCCACT 521 535 549 Antisense
TCTGTCATCCACTTGTCTAATTTGT 16 609 561 Antisense
GCTACATTGCCTTGTGGTTCATCAT 208 303 593 Antisense
Sequence Source Affymetrix Proprietary Database