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[186155_s_at]

Description T24A6.18 /REP_DB=WormBase Gene ID /WP=CE28489 /TR=O61948 /GB=AAC17806.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 44      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 22.6
(3)
A 		11.4
(-1.2)
A 		6.5
(-3)
A 		18.7
(1.5)
A 		16
B 51.4
(3)
A 		50.3
(2.9)
A 		5.6
(-3)
A 		18.6
(-1.3)
A 		46
C 24.5
(-2.6)
A 		62.3
(3)
A 		25.2
(-2.5)
A 		21.6
(-3)
A 		41
avr 32.8
(1.2) 		41.3
(3) 		12.4
(-3) 		19.6
(-1.5) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 79
(3)
P 		10
(-2.4)
A 		8.8
(-2.5)
A 		10
(-2.4)
A 		14
(-2.1)
A 		2.9
(-3)
A 		76
B 55.5
(3)
M 		47.8
(2)
P 		41.6
(1.1)
A 		11.3
(-2.9)
A 		10.9
(-3)
A 		42.2
(1.2)
M 		45
C 4.1
(-3)
A 		5.5
(-2.7)
A 		9.6
(-1.8)
A 		32.1
(3)
A 		16.1
(-0.4)
A 		17
(-0.2)
A 		28
avr 46.2
(3) 		21.1
(-1.6) 		20
(-1.8) 		17.8
(-2.2) 		13.7
(-3) 		20.7
(-1.7) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 8.2
(3)
A 		2.5
(-2.3)
A 		1.7
(-3)
A 		2.7
(-2.1)
A 		7
B 16.4
(3)
A 		12.4
(1.4)
A 		1.3
(-3)
A 		4
(-1.9)
A 		15
C 8.1
(-1.1)
A 		17.9
(3)
A 		8.8
(-0.8)
A 		3.6
(-3)
A 		14
avr 10.9
(3) 		10.9
(3) 		3.9
(-2.6) 		3.4
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 14.6
(3)
P 		3.6
(-1.7)
A 		1.9
(-2.5)
A 		2.5
(-2.2)
A 		4.2
(-1.5)
A 		0.7
(-3)
A 		14
B 19.3
(3)
M 		15.9
(1.7)
P 		10.1
(-0.4)
A 		3
(-3)
A 		4.4
(-2.5)
A 		15.7
(1.7)
M 		16
C 1.5
(-3)
A 		1.7
(-2.8)
A 		2.4
(-1.9)
A 		6.5
(3)
A 		5.2
(1.4)
A 		5.7
(2)
A 		5
avr 11.8
(3) 		7.1
(-0.6) 		4.8
(-2.4) 		4
(-3) 		4.6
(-2.5) 		7.4
(-0.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186155_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15600
Sequence Type Exemplar sequence
Representative Public ID T24A6.18 NCBI
Target Description T24A6.18 /REP_DB=WormBase Gene ID /WP=CE28489 /TR=O61948 /GB=AAC17806.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071596
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000027429 ENSEMBL cdna:SNAP chromosome:CEL140:V:3552661:3554993:-1 None
NM_071596 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-29) (grl-29) mRNA, complete cds. None
T24A6.18 ENSEMBL cdna:known chromosome:CEL140:V:3554437:3555062:-1 gene:T24A6.18 None
GENEFINDER00000027440 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3554437:3554993:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071595 11/11 Negative Strand Matching Probes A 
SNAP00000027430 11/11 Negative Strand Matching Probes None
GENEFINDER00000027441 11/11 Negative Strand Matching Probes None
T24A6.20 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3553939-3555062(-) 88.43 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grl-29
Ensembl T24A6.18
Entrez Gene 188835 Entrez gene
SwissProt O61948 EMBL-EBI
WormBase CE28489 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73895 Ground-like (grd related) protein 29 [Caenorhabditis elegans] ref|NP_503997.1| GRound-Like (grd related) family member (grl-29) [Caenorhabditis elegans] 4.0E-49
blast AAK73895 Ground-like (grd related) protein 29 [Caenorhabditis elegans] ref|NP_503997.1| GRound-Like (grd related) family member (grl-29) [Caenorhabditis elegans] 9.0E-49
blast B89005 protein T24A6.18 [imported] - Caenorhabditis elegans 1.0E-48
blast B89005 protein T24A6.18 [imported] - Caenorhabditis elegans 3.0E-48
blast AAF39799 Ground-like (grd related) protein 27 [Caenorhabditis elegans] ref|NP_504006.1| GRound-Like (grd related) family member (grl-27) [Caenorhabditis elegans] 1.0E-36
blast AAF39799 Ground-like (grd related) protein 27 [Caenorhabditis elegans] ref|NP_504006.1| GRound-Like (grd related) family member (grl-27) [Caenorhabditis elegans] 2.0E-36
blast AAK73895 Ground-like (grd related) protein 29 [Caenorhabditis elegans] ref|NP_503997.1| GRound-Like (grd related) family member (grl-29) [Caenorhabditis elegans] 1.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 2.4E-26
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 3.0E-12
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 2.4E-26
Sequence
Target Sequence 
>C. ELEGANS:186155_S_AT
tcaagcgggtccttattaatttcggggtacaggaaccccatgctagagtgcttctcccag
ttgggaatactcttcaaaagatcagccagcaagacctcggcggcttcaggagtatctgcg
tagaatggagcagggctcagcttgtttttagtgacaagtcggatggttgcgtaccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGCGGGTCCTTATTAATTTCGG 137 627 581 Antisense
TTCGGGGTACAGGAACCCCATGCTA 408 695 601 Antisense
ACAGGAACCCCATGCTAGAGTGCTT 457 97 609 Antisense
TAGAGTGCTTCTCCCAGTTGGGAAT 348 651 624 Antisense
CTCCCAGTTGGGAATACTCTTCAAA 596 231 634 Antisense
GGGAATACTCTTCAAAAGATCAGCC 557 493 643 Antisense
AAGATCAGCCAGCAAGACCTCGGCG 696 153 658 Antisense
TCGGCGGCTTCAGGAGTATCTGCGT 463 607 677 Antisense
TGGAGCAGGGCTCAGCTTGTTTTTA 55 549 706 Antisense
AGGGCTCAGCTTGTTTTTAGTGACA 233 59 712 Antisense
GACAAGTCGGATGGTTGCGTACCCA 632 361 733 Antisense
Sequence Source Affymetrix Proprietary Database